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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76278 (39 seq.)
>WENV180182435
OAWO01031591
[OAWO] human gut metagenome; faeces
264
178
-
Leu
TAA
[ENA]
¢þ
>WENV180334224
OBLF01006997
[OBLF] metagenome; feces
2112
2026
-
Leu
TAA
[ENA]
¢þ
>WENV180838279
ODKG01052653
[ODKG] human metagenome; G_DNA_Stool
484
570
+
Leu
TAA
[ENA]
¢þ
>WENV181501497
OGGI01000387
[OGGI] metagenome; Human gut stool
41327
41241
-
Leu
TAA
[ENA]
¢þ
>WENV181798680
OGRX01000008
[OGRX] human gut metagenome; fecal sample 2 from infant 8
148159
148245
+
Leu
TAA
[ENA]
¢þ
>WENV182809336
OJWP01000012
[OJWP] human gut metagenome; human gut
20107
20193
+
Leu
TAA
[ENA]
¢þ
>WENV182811271
OJXK01000035
[OJXK] human gut metagenome; human gut
2017
1931
-
Leu
TAA
[ENA]
¢þ
>WENV182811852
OJXM01000088
[OJXM] human gut metagenome; human gut
32046
31960
-
Leu
TAA
[ENA]
¢þ
>WENV182814820
OJYN01000290
[OJYN] human gut metagenome; human gut
4042
3956
-
Leu
TAA
[ENA]
¢þ
>WENV182827953
OKDE01000177
[OKDE] human gut metagenome; human gut
14445
14531
+
Leu
TAA
[ENA]
¢þ
>WENV182837948
OKGN01000185
[OKGN] human gut metagenome; human gut
9878
9964
+
Leu
TAA
[ENA]
¢þ
>WENV182857992
OKOB01001301
[OKOB] human gut metagenome; human gut
1917
2003
+
Leu
TAA
[ENA]
¢þ
>WENV182860333
OKOT01000093
[OKOT] human gut metagenome; human gut
1594
1508
-
Leu
TAA
[ENA]
¢þ
>WENV182943978
OKVI01001875
[OKVI] human gut metagenome; human gut
205
291
+
Leu
TAA
[ENA]
¢þ
>WENV182952893
OKVX01000408
[OKVX] human gut metagenome; human gut
9108
9194
+
Leu
TAA
[ENA]
¢þ
>WENV183237150
OLQY01000059
[OLQY] human gut metagenome; faeces
46111
46197
+
Leu
TAA
[ENA]
¢þ
>WENV183725791
PJQF01017077
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
538
452
-
Leu
TAA
[ENA]
¢þ
>WENV183732469
PJTX01000615
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
1146
1232
+
Leu
TAA
[ENA]
¢þ
>WENV183732535
PJTX01001764
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
4687
4601
-
Leu
TAA
[ENA]
¢þ
>WENV183780612
PPYF01172933
[PPYF] human gut metagenome; stool from patient with Crohn's disease
20
106
+
Leu
TAA
[ENA]
¢þ
>WENV183780913
PPYF01188223
[PPYF] human gut metagenome; stool from patient with Crohn's disease
89
175
+
Leu
TAA
[ENA]
¢þ
>WENV183790754
PPYF01421256
[PPYF] human gut metagenome; stool from patient with Crohn's disease
46581
46495
-
Leu
TAA
[ENA]
¢þ
>WENV183791241
PPYF01429230
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1292
1206
-
Leu
TAA
[ENA]
¢þ
>WENV170001943
AGFT01046679
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
455
541
+
Leu
TAA
[ENA]
¢þ
>C181016311
CP014156
Gammaproteobacteria
Klebsiella quasipneumoniae HKUOPL4 [CP014156]
1018192
1018106
-
Leu
TAA
-
¡û
>C181059655
CP022151
Gammaproteobacteria
Citrobacter freundii 705SK3 [CP022151]
2009620
2009706
+
Leu
TAA
-
¡û
>C181061373
CP022273
Gammaproteobacteria
Citrobacter freundii 18-1 [CP022273]
71895
71981
+
Leu
TAA
-
¡û
>C181107497
CP024885
Gammaproteobacteria
Klebsiella aerogenes AR_0009 [CP024885]
4890272
4890186
-
Leu
TAA
-
¡û
>C181129771
CP026231
Gammaproteobacteria
Citrobacter freundii complex sp. CFNIH4 [CP026231]
2315329
2315243
-
Leu
TAA
-
¡û
>C181184342
CP029727
Gammaproteobacteria
Citrobacter sp. CRE-46 AR_0157 [CP029727]
3019278
3019364
+
Leu
TAA
-
¡û
>C191110898
CP033742
Gammaproteobacteria
Citrobacter freundii FDAARGOS_550 [CP033742]
524312
524226
-
Leu
TAA
-
¡û
>C191166228
CP039452
Gammaproteobacteria
Enterobacter bugandensis 1367 [CP039452]
3177587
3177673
+
Leu
TAA
-
¡û
>C191183057
CP040827
Gammaproteobacteria
Enterobacter cloacae NH77 [CP040827]
4702267
4702353
+
Leu
TAA
-
¡û
>C191201836
LR134235
Gammaproteobacteria
Klebsiella variicola NCTC9668 [LR134235]
4526211
4526297
+
Leu
TAA
-
¡û
>C191220603
LR588409
Gammaproteobacteria
Klebsiella variicola NCTC9178 [LR588409]
5081266
5081180
-
Leu
TAA
-
¡û
>W1910454323
FWLK01000011
Gammaproteobacteria
Klebsiella variicola VRCO0297 [FWLK]
868
782
-
Leu
TAA
[ENA]
¡û
>W1910456170
FWMI01000002
Gammaproteobacteria
Klebsiella quasipneumoniae VRCO0338 [FWMI]
770294
770208
-
Leu
TAA
[ENA]
¡û
>W1910471674
FXBG01000002
Gammaproteobacteria
Klebsiella quasipneumoniae VRCO0039 [FXBG]
141122
141208
+
Leu
TAA
[ENA]
¡û
>W1530025680
JVND01000133
Gammaproteobacteria
Enterobacter roggenkampii 28_ECLO [JVND]
17658
17741
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK