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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76532 (32 seq.)
>W1710996473
LQBL01000027
Actinomycetota
Serinicoccus chungangensis [LQBL]
150123
150209
+
Leu
GAG
[ENA]
¡û
>W1711187514
LWPN01000480
Actinomycetota
Kytococcus sp. HMSC28H12 [LWPN]
5176
5260
+
Leu
GAG
[ENA]
¡û
>W1711491950
MKJZ01000035
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
71581
71667
+
Leu
GAG
[ENA]
¡û
>W1711492045
MKKB01000406
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
140138
140222
+
Leu
GAG
[ENA]
¡û
>W1711492207
MKKF01000007
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
2633
2549
-
Leu
GAG
[ENA]
¡û
>C171034653
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
336541
336625
+
Leu
GAG
-
¡û
>W131217034
ATWJ01000010
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
182985
182899
-
Leu
GAG
[ENA]
¡û
>W131217153
ATWM01000002
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
340697
340613
-
Leu
GAG
[ENA]
¡û
>WENV180318081
OBKL01054948
[OBKL] soil metagenome; Alaskan Permafrost
39
123
+
Leu
GAG
[ENA]
¢þ
>WENV181189585
OEOF01097756
[OEOF] activated sludge metagenome; Activated Sludge
79
165
+
Leu
GAG
[ENA]
¢þ
>WENV183092662
OLLI01000806
[OLLI] soil metagenome; soil
143
59
-
Leu
GAG
[ENA]
¢þ
>WENV183749154
PPFU01127408
[PPFU] hypolithon metagenome; Antarctic Hypolithon
714
630
-
Leu
GAG
[ENA]
¢þ
>WENV170009510
APMI01000504
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
494
580
+
Leu
GAG
[ENA]
¢þ
>WENV170010807
APMI01029780
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
283
367
+
Leu
GAG
[ENA]
¢þ
>WENV170010915
APMI01034949
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
494
580
+
Leu
GAG
[ENA]
¢þ
>WENV170011044
APMI01041024
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2288
2372
+
Leu
GAG
[ENA]
¢þ
>WENV170973859
MTKY01051431
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3301
3385
+
Leu
GAG
[ENA]
¢þ
>WENV170977699
MTKZ01029499
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1502
1418
-
Leu
GAG
[ENA]
¢þ
>C181197149
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
552023
552109
+
Leu
GAG
-
¡û
>C191150930
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
2327998
2327912
-
Leu
GAG
-
¡û
>C191158397
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
2086728
2086644
-
Leu
GAG
-
¡û
>C191183691
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
1730890
1730806
-
Leu
GAG
-
¡û
>W09109308
ABUD01000007
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
50670
50584
-
Leu
GAG
[ENA]
¡û
>W1911495843
OBQK01000003
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
154354
154270
-
Leu
GAG
[ENA]
¡û
>W1911817443
QZMN01000018
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
9079
8995
-
Leu
GAG
[ENA]
¡û
>W1810189345
PKIZ01000001
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
169654
169570
-
Leu
GAG
[ENA]
¡û
>W1810535022
QDDJ01000002
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
201092
201008
-
Leu
GAG
[ENA]
¡û
>W1810697558
QLVD01000015
Actinomycetota
Ornithinimicrobium murale DSM 22056 [QLVD]
109728
109814
+
Leu
GAG
[ENA]
¡û
>C10108050
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
1415503
1415589
+
Leu
GAG
[Ensembl]
¡û
>W11177026
AFYF01000075
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
34550
34466
-
Leu
GAG
[ENA]
¡û
>W1610851130
LQBL01000027
Actinomycetota
Serinicoccus chungangensis [LQBL]
150123
150209
+
Leu
GAG
[ENA]
¡û
>W1710610286
FYEZ01000001
Actinomycetota
Kytococcus aerolatus [FYEZ]
144056
144142
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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