This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77394 (107 seq.)
>W1711383824
MECU01000077
Gammaproteobacteria
Shigella sp. FC130 [MECU]
140351
140265
-
Leu
CAG
[ENA]
¡û
>W1711430345
MIIZ01001209
Gammaproteobacteria
Shigella sp. FC1967 [MIIZ]
13327
13413
+
Leu
CAG
[ENA]
¡û
>W1711608796
MOSG01000075
Gammaproteobacteria
Proteus sp. H24 [MOSG]
7681
7767
+
Leu
CAG
[ENA]
¡û
>W1711684943
MSAK01000002
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae [MSAK]
87268
87182
-
Leu
CAG
[ENA]
¡û
>W131090658
AOGG01000012
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport str. JS09102 [AOGG]
31849
31763
-
Leu
CAG
[ENA]
¡û
>W1712020037
NEYX01000028
Gammaproteobacteria
Proteus mirabilis [NEYX]
152829
152743
-
Leu
CAG
[ENA]
¡û
>C009201
CP000653
Gammaproteobacteria
Enterobacter sp. 638 [CP000653]
4327475
4327389
-
Leu
CAG
[Ensembl]
¡û
>C009233
CP000653
Gammaproteobacteria
Enterobacter sp. 638 [CP000653]
597021
596935
-
Leu
CAG
[Ensembl]
¡û
>W141106310
AVPP01000033
Gammaproteobacteria
Siccibacter turicensis z508 [AVPP]
14782
14696
-
Leu
CAG
[ENA]
¡û
>WENV181228853
OFEI01000006
[OFEI] insect metagenome; insect
95923
96009
+
Leu
CAG
[ENA]
¢þ
>WENV181232015
OFEL01000057
[OFEL] insect metagenome; insect
1891
1977
+
Leu
CAG
[ENA]
¢þ
>W141136604
AWFZ01000050
Gammaproteobacteria
Siccibacter turicensis LMG 23730 [AWFZ]
131470
131556
+
Leu
CAG
[ENA]
¡û
>W141153599
AXDM01000003
Gammaproteobacteria
Siccibacter turicensis z610 [AXDM]
16535
16449
-
Leu
CAG
[ENA]
¡û
>WENV182394895
OIEK01000015
[OIEK] human gut metagenome; human gut
107546
107632
+
Leu
CAG
[ENA]
¢þ
>WENV182595847
OJIY01000045
[OJIY] metagenome; faeces
34094
34180
+
Leu
CAG
[ENA]
¢þ
>WENV182951450
OKVU01000526
[OKVU] human gut metagenome; human gut
5655
5569
-
Leu
CAG
[ENA]
¢þ
>W141354936
JCMR01000020
Gammaproteobacteria
Klebsiella pneumoniae BIDMC 47 [JCMR]
89420
89334
-
Leu
CAG
[ENA]
¡û
>WENV183731238
PJTS01025013
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
363
449
+
Leu
CAG
[ENA]
¢þ
>WENV170022745
BCQK01043859
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
221
135
-
Leu
CAG
[ENA]
¢þ
>C181031851
CP018628
Gammaproteobacteria
Lelliottia jeotgali PFL01 [CP018628]
4396887
4396801
-
Leu
CAG
-
¡û
>C181031884
CP018628
Gammaproteobacteria
Lelliottia jeotgali PFL01 [CP018628]
642607
642521
-
Leu
CAG
-
¡û
>C181031885
CP018628
Gammaproteobacteria
Lelliottia jeotgali PFL01 [CP018628]
642491
642405
-
Leu
CAG
-
¡û
>C181083792
CP023529
Gammaproteobacteria
Lelliottia amnigena FDAARGOS_395 [CP023529]
4062003
4061917
-
Leu
CAG
-
¡û
>C181083804
CP023529
Gammaproteobacteria
Lelliottia amnigena FDAARGOS_395 [CP023529]
3279914
3279828
-
Leu
CAG
-
¡û
>C181166453
CP028520
Gammaproteobacteria
Lelliottia sp. WB101 [CP028520]
1126354
1126440
+
Leu
CAG
-
¡û
>C181190081
CP030211
Gammaproteobacteria
Salmonella enterica SA20051528 [CP030211]
3932829
3932915
+
Leu
CAG
-
¡û
>C181190770
CP030238
Gammaproteobacteria
Salmonella enterica SA20055162 [CP030238]
4539403
4539317
-
Leu
CAG
-
¡û
>C191110572
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
3851173
3851259
+
Leu
CAG
-
¡û
>C191196149
LR134135
Gammaproteobacteria
Lelliottia amnigena NCTC12124 [LR134135]
4261966
4261880
-
Leu
CAG
-
¡û
>W09106377
AAVF01000004
Gammaproteobacteria
Enterobacter sp. 638 [AAVF]
196748
196662
-
Leu
CAG
[ENA]
¡û
>W09106418
AAVF01000021
Gammaproteobacteria
Enterobacter sp. 638 [AAVF]
54558
54472
-
Leu
CAG
[ENA]
¡û
>W141713251
JMSQ01000004
Gammaproteobacteria
Siccibacter colletis 1383 [JMSQ]
60285
60199
-
Leu
CAG
[ENA]
¡û
>W141804951
JPIX01000012
Gammaproteobacteria
Proteus vulgaris [JPIX]
153485
153399
-
Leu
CAG
[ENA]
¡û
>W1910150305
BIJU01000012
Gammaproteobacteria
Klebsiella pneumoniae TUM14093 [BIJU]
84715
84629
-
Leu
CAG
[ENA]
¡û
>W1910152214
BIKS01000011
Gammaproteobacteria
Klebsiella pneumoniae TUM14119 [BIKS]
63381
63467
+
Leu
CAG
[ENA]
¡û
>W1910454856
FWLR01000016
Gammaproteobacteria
Klebsiella pneumoniae VRCO0318 [FWLR]
89741
89655
-
Leu
CAG
[ENA]
¡û
>W1910454908
FWLS01000010
Gammaproteobacteria
Klebsiella pneumoniae VRCO0319 [FWLS]
86910
86824
-
Leu
CAG
[ENA]
¡û
>W1910455014
FWLT01000017
Gammaproteobacteria
Klebsiella pneumoniae VRCO0316 [FWLT]
86910
86824
-
Leu
CAG
[ENA]
¡û
>W1910455101
FWLU01000018
Gammaproteobacteria
Klebsiella pneumoniae VRCO0323 [FWLU]
86895
86809
-
Leu
CAG
[ENA]
¡û
>W1910455171
FWLV01000017
Gammaproteobacteria
Klebsiella pneumoniae VRCO0322 [FWLV]
86910
86824
-
Leu
CAG
[ENA]
¡û
>W1910455326
FWLX01000017
Gammaproteobacteria
Klebsiella pneumoniae VRCO0321 [FWLX]
64119
64205
+
Leu
CAG
[ENA]
¡û
>W1910455402
FWLY01000015
Gammaproteobacteria
Klebsiella pneumoniae VRCO0320 [FWLY]
86910
86824
-
Leu
CAG
[ENA]
¡û
>W1910459045
FWNT01000017
Gammaproteobacteria
Klebsiella pneumoniae VRCO0315 [FWNT]
64119
64205
+
Leu
CAG
[ENA]
¡û
>W1910461036
FWOT01000019
Gammaproteobacteria
Klebsiella pneumoniae VRCO0314 [FWOT]
63741
63827
+
Leu
CAG
[ENA]
¡û
>W1910495430
FXSG01000014
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 3189STDY5864820 [FXSG]
67023
67109
+
Leu
CAG
[ENA]
¡û
>W1910857272
NBUT01000028
Gammaproteobacteria
Proteus vulgaris CICC [NBUT]
194443
194357
-
Leu
CAG
[ENA]
¡û
>W1910862051
NCMH01000063
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn28 [NCMH]
50011
49925
-
Leu
CAG
[ENA]
¡û
>W1911231219
NRYV01000103
Gammaproteobacteria
Escherichia coli A5 [NRYV]
2530
2444
-
Leu
CAG
[ENA]
¡û
>W1911386066
NVXY01000003
Gammaproteobacteria
Enterobacterales bacterium CwR94 [NVXY]
220144
220058
-
Leu
CAG
[ENA]
¡û
>W1911386067
NVXY01000003
Gammaproteobacteria
Enterobacterales bacterium CwR94 [NVXY]
220030
219944
-
Leu
CAG
[ENA]
¡û
>W1911386068
NVXY01000003
Gammaproteobacteria
Enterobacterales bacterium CwR94 [NVXY]
219917
219831
-
Leu
CAG
[ENA]
¡û
>W1911550021
OVEE01000024
Gammaproteobacteria
Klebsiella pneumoniae KCRI-567B [OVEE]
27381
27295
-
Leu
CAG
[ENA]
¡û
>W1911550103
OVEF01000023
Gammaproteobacteria
Klebsiella pneumoniae KCRI-576 [OVEF]
63381
63467
+
Leu
CAG
[ENA]
¡û
>W1810053161
PDDA01000001
Gammaproteobacteria
Lelliottia amnigena LMG 2784 [PDDA]
107449
107535
+
Leu
CAG
[ENA]
¡û
>W1810053196
PDDA01000013
Gammaproteobacteria
Lelliottia amnigena LMG 2784 [PDDA]
52594
52508
-
Leu
CAG
[ENA]
¡û
>W1810096196
PGJR01000022
Gammaproteobacteria
Escherichia coli sc14-202 [PGJR]
52691
52605
-
Leu
CAG
[ENA]
¡û
>W1810107096
PGWT01000004
Gammaproteobacteria
Proteus terrae JCM 30699 [PGWT]
22653
22739
+
Leu
CAG
[ENA]
¡û
>W1810116042
PHNN01000006
Gammaproteobacteria
Proteus vulgaris KCTC 2579 [PHNN]
153654
153568
-
Leu
CAG
[ENA]
¡û
>W1810130022
PIBT01000204
Gammaproteobacteria
Klebsiella pneumoniae A4 [PIBT]
2192
2278
+
Leu
CAG
[ENA]
¡û
>W1810130696
PICD01000989
Gammaproteobacteria
Klebsiella pneumoniae D11 [PICD]
1635
1549
-
Leu
CAG
[ENA]
¡û
>W1810135034
PIEK01000897
Gammaproteobacteria
Klebsiella pneumoniae D53 [PIEK]
509
423
-
Leu
CAG
[ENA]
¡û
>W1810147290
PIQM01000002
Gammaproteobacteria
Cedecea lapagei SLM1 [PIQM]
999627
999713
+
Leu
CAG
[ENA]
¡û
>W1810185334
PKFT01000003
Gammaproteobacteria
Lelliottia sp. F153 [PKFT]
241737
241823
+
Leu
CAG
[ENA]
¡û
>W1810185370
PKFT01000011
Gammaproteobacteria
Lelliottia sp. F153 [PKFT]
32940
33026
+
Leu
CAG
[ENA]
¡û
>W1810185405
PKFU01000004
Gammaproteobacteria
Lelliottia sp. F159 [PKFU]
242411
242325
-
Leu
CAG
[ENA]
¡û
>W1810185448
PKFU01000014
Gammaproteobacteria
Lelliottia sp. F159 [PKFU]
53500
53414
-
Leu
CAG
[ENA]
¡û
>W1810185490
PKFV01000005
Gammaproteobacteria
Lelliottia sp. F154 [PKFV]
242411
242325
-
Leu
CAG
[ENA]
¡û
>W1810185524
PKFV01000013
Gammaproteobacteria
Lelliottia sp. F154 [PKFV]
53500
53414
-
Leu
CAG
[ENA]
¡û
>W1810266248
PQVR01000007
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
176953
177039
+
Leu
CAG
[ENA]
¡û
>W1810266249
PQVR01000007
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
177069
177155
+
Leu
CAG
[ENA]
¡û
>W1810266278
PQVR01000019
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
33323
33409
+
Leu
CAG
[ENA]
¡û
>W1810266317
PQVS01000005
Gammaproteobacteria
Lelliottia sp. 7254-16 [PQVS]
251972
252058
+
Leu
CAG
[ENA]
¡û
>W1810266318
PQVS01000005
Gammaproteobacteria
Lelliottia sp. 7254-16 [PQVS]
252088
252174
+
Leu
CAG
[ENA]
¡û
>W1810266359
PQVS01000022
Gammaproteobacteria
Lelliottia sp. 7254-16 [PQVS]
52653
52567
-
Leu
CAG
[ENA]
¡û
>W1810266396
PQVT01000005
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
251972
252058
+
Leu
CAG
[ENA]
¡û
>W1810266397
PQVT01000005
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
252088
252174
+
Leu
CAG
[ENA]
¡û
>W1810266432
PQVT01000021
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
52653
52567
-
Leu
CAG
[ENA]
¡û
>W1810266477
PQVU01000005
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
251972
252058
+
Leu
CAG
[ENA]
¡û
>W1810266478
PQVU01000005
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
252088
252174
+
Leu
CAG
[ENA]
¡û
>W1810266511
PQVU01000020
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
52653
52567
-
Leu
CAG
[ENA]
¡û
>W1810266551
PQVV01000004
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
251972
252058
+
Leu
CAG
[ENA]
¡û
>W1810266552
PQVV01000004
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
252088
252174
+
Leu
CAG
[ENA]
¡û
>W1810266594
PQVV01000022
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
52653
52567
-
Leu
CAG
[ENA]
¡û
>W1810266634
PQVW01000005
Gammaproteobacteria
Lelliottia aquatilis 6331-17 [PQVW]
252088
252174
+
Leu
CAG
[ENA]
¡û
>W1810266669
PQVW01000022
Gammaproteobacteria
Lelliottia aquatilis 6331-17 [PQVW]
52653
52567
-
Leu
CAG
[ENA]
¡û
>W1810376852
PXIE01000019
Gammaproteobacteria
Klebsiella pneumoniae KPM-3 [PXIE]
32016
31930
-
Leu
CAG
[ENA]
¡û
>W1810398516
PYEP01000002
Gammaproteobacteria
Siccibacter turicensis 6100069499-17 [PYEP]
358518
358604
+
Leu
CAG
[ENA]
¡û
>W1810676704
QKME01000006
Gammaproteobacteria
Scandinavium goeteborgense YR018 [QKME]
20407
20321
-
Leu
CAG
[ENA]
¡û
>W1511205237
JMSP01000012
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [JMSP]
12542
12628
+
Leu
CAG
[ENA]
¡û
>W1511395618
JTBO01000001
Gammaproteobacteria
Enterobacter hormaechei FDAARGOS_68 [JTBO]
3731677
3731763
+
Leu
CAG
[ENA]
¡û
>C161090657
CP015774
Gammaproteobacteria
Lelliottia amnigena ZB04 [CP015774]
4451226
4451140
-
Leu
CAG
[Ensembl]
¡û
>C161090690
CP015774
Gammaproteobacteria
Lelliottia amnigena ZB04 [CP015774]
658786
658700
-
Leu
CAG
[Ensembl]
¡û
>C161090691
CP015774
Gammaproteobacteria
Lelliottia amnigena ZB04 [CP015774]
658670
658584
-
Leu
CAG
[Ensembl]
¡û
>W1610062433
BCNN01000008
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
239801
239887
+
Leu
CAG
[ENA]
¡û
>W1610062446
BCNN01000013
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
52573
52487
-
Leu
CAG
[ENA]
¡û
>W1610076391
BCYS01000001
Gammaproteobacteria
Kluyvera intermedia NBRC 102594 = ATCC 33110 [BCYS]
113
27
-
Leu
CAG
[ENA]
¡û
>W1610091864
CXPD01000003
Gammaproteobacteria
Klebsiella pneumoniae [CXPD]
86720
86634
-
Leu
CAG
[ENA]
¡û
>W1610491668
FLEZ01000007
Gammaproteobacteria
Klebsiella pneumoniae [FLEZ]
283092
283178
+
Leu
CAG
[ENA]
¡û
>W1610575819
LAGS01000029
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGS]
55232
55318
+
Leu
CAG
[ENA]
¡û
>W1710015943
AROQ01000048
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport str. SHSN007 [AROQ]
289
203
-
Leu
CAG
[ENA]
¡û
>W1710059974
BCNN01000008
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
239801
239887
+
Leu
CAG
[ENA]
¡û
>W1710059987
BCNN01000013
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
52573
52487
-
Leu
CAG
[ENA]
¡û
>W1710095221
CXPD01000003
Gammaproteobacteria
Klebsiella pneumoniae [CXPD]
86720
86634
-
Leu
CAG
[ENA]
¡û
>W1710485138
FLEZ01000007
Gammaproteobacteria
Klebsiella pneumoniae [FLEZ]
283092
283178
+
Leu
CAG
[ENA]
¡û
>W1710551493
FOGC01000008
Gammaproteobacteria
Rosenbergiella nectarea [FOGC]
103643
103729
+
Leu
CAG
[ENA]
¡û
>W1710570367
FOVC01000003
Gammaproteobacteria
Izhakiella capsodis [FOVC]
229499
229585
+
Leu
CAG
[ENA]
¡û
>W1710694083
LAGS01000029
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGS]
55232
55318
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK