This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77433 (27 seq.)
>C171074679
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
802713
802627
-
Leu
CAG
-
¡û
>C171074783
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
802717
802631
-
Leu
CAG
-
¡û
>C171074835
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
792885
792799
-
Leu
CAG
-
¡û
>C019153
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
17102
17016
-
Leu
CAG
[Ensembl]
¡û
>WENV180052323
MPLU02288852
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
303
389
+
Leu
CAG
[ENA]
¢þ
>WENV180256771
OBEQ010851011
[OBEQ] groundwater metagenome; groundwater
199
285
+
Leu
CAG
[ENA]
¢þ
>WENV180320975
OBKQ01073716
[OBKQ] soil metagenome; Clay
96
13
-
Leu
CAG
[ENA]
¢þ
>WENV180352412
OBLQ010247782
[OBLQ] soil metagenome; soil
263
177
-
Leu
CAG
[ENA]
¢þ
>WENV180360308
OBNT01051727
[OBNT] marine metagenome; Sea Water
263
349
+
Leu
CAG
[ENA]
¢þ
>w001331
AAAG02000001
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
1250659
1250745
+
Leu
CAG
[ENA]
¡û
>WENV182573455
OJFP01001915
[OJFP] seawater metagenome; Sea water
4764
4850
+
Leu
CAG
[ENA]
¢þ
>WENV182580691
OJGW01007760
[OJGW] seawater metagenome; Sea water
1589
1503
-
Leu
CAG
[ENA]
¢þ
>WENV183062280
OLID01001597
[OLID] seawater metagenome; Sea water
3204
3118
-
Leu
CAG
[ENA]
¢þ
>WENV183687762
ORMF011186316
[ORMF] groundwater metagenome; groundwater
1912
1826
-
Leu
CAG
[ENA]
¢þ
>WENV170478338
CEVK01036454
[CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
170
84
-
Leu
CAG
[ENA]
¢þ
>WENV170652485
JRYH01004557
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
4291
4377
+
Leu
CAG
[ENA]
¢þ
>WENV170894472
MDTD01066132
[MDTD] marine metagenome; seawater
3398
3312
-
Leu
CAG
[ENA]
¢þ
>C181175721
CP029176
Alphaproteobacteria
Acidibrevibacterium fodinaquatile G45-3 [CP029176]
1679446
1679360
-
Leu
CAG
-
¡û
>W1910744243
MIAC01000268
Alphaproteobacteria
Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15 [MIAC]
18897
18983
+
Leu
CAG
[ENA]
¡û
>W1911708739
QOZR01000007
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
119439
119525
+
Leu
CAG
[ENA]
¡û
>C151004151
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
792725
792639
-
Leu
CAG
[Ensembl]
¡û
>C151099573
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3833576
3833662
+
Leu
CAG
[Ensembl]
¡û
>C151099574
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3833710
3833796
+
Leu
CAG
[Ensembl]
¡û
>C151099575
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3833950
3834036
+
Leu
CAG
[Ensembl]
¡û
>C151099576
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3834085
3834171
+
Leu
CAG
[Ensembl]
¡û
>C151099577
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3834219
3834305
+
Leu
CAG
[Ensembl]
¡û
>W1710514013
FNAP01000006
Alphaproteobacteria
Rhodospira trueperi [FNAP]
195665
195751
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK