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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77714 (33 seq.)
>W131164641
ARAY01000007
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
204068
204154
+
Leu
CAG
[ENA]
¡û
>W131164642
ARAY01000008
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
11
97
+
Leu
CAG
[ENA]
¡û
>W131164664
ARAY01000034
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
5
91
+
Leu
CAG
[ENA]
¡û
>W131164665
ARAY01000034
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
11259
11343
+
Leu
CAG
[ENA]
¡û
>C171064541
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
2625015
2625101
+
Leu
CAG
-
¡û
>C171101150
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
2086422
2086508
+
Leu
CAG
-
¡û
>W131155838
AQOX01000002
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [AQOX]
152164
152250
+
Leu
CAG
[ENA]
¡û
>WENV180360990
OBNU01078140
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
306
220
-
Leu
CAG
[ENA]
¢þ
>W141055765
AOSK01000046
Alphaproteobacteria
Rubellimicrobium mesophilum DSM 19309 [AOSK]
9563
9649
+
Leu
CAG
[ENA]
¡û
>W141063303
APGJ01000003
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
298775
298689
-
Leu
CAG
[ENA]
¡û
>W141230423
BATB01000006
Alphaproteobacteria
Limimaricola cinnabarinus LL-001 [BATB]
68539
68453
-
Leu
CAG
[ENA]
¡û
>WENV182561426
OJDW01000037
[OJDW] seawater metagenome; Sea water
41724
41638
-
Leu
CAG
[ENA]
¢þ
>WENV182566893
OJEN01000005
[OJEN] seawater metagenome; Sea water
65057
64971
-
Leu
CAG
[ENA]
¢þ
>WENV182577272
OJGD01000178
[OJGD] seawater metagenome; Sea water
14475
14561
+
Leu
CAG
[ENA]
¢þ
>WENV182587266
OJHM01000076
[OJHM] seawater metagenome; Sea water
27786
27872
+
Leu
CAG
[ENA]
¢þ
>WENV183056907
OLHK01000009
[OLHK] seawater metagenome; Sea water
45664
45750
+
Leu
CAG
[ENA]
¢þ
>WENV170974178
MTKY01055024
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2342
2256
-
Leu
CAG
[ENA]
¢þ
>W1910443278
FWFY01000002
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
391639
391553
-
Leu
CAG
[ENA]
¡û
>W1910500576
FXZK01000009
Alphaproteobacteria
Flavimaricola marinus CECT 8899 [FXZK]
44192
44106
-
Leu
CAG
[ENA]
¡û
>W1911189723
NQWH01000024
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
46972
47058
+
Leu
CAG
[ENA]
¡û
>W1911535558
OMKW01000001
Alphaproteobacteria
Pontivivens insulae CeCT 8812 [OMKW]
734100
734186
+
Leu
CAG
[ENA]
¡û
>W1810400360
PYGB01000001
Alphaproteobacteria
Limimaricola soesokkakensis DSM 29956 [PYGB]
151553
151639
+
Leu
CAG
[ENA]
¡û
>W1810787210
QRDO01000002
Alphaproteobacteria
Pontivivens insulae DSM 103361 [QRDO]
734263
734349
+
Leu
CAG
[ENA]
¡û
>C11111808
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2081532
2081618
+
Leu
CAG
[Ensembl]
¡û
>C11111873
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
2367506
2367592
+
Leu
CAG
[Ensembl]
¡û
>C161047266
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
2472033
2472119
+
Leu
CAG
-
¡û
>C161099993
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
2470945
2471031
+
Leu
CAG
-
¡û
>W1610014729
AONG01000003
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
203702
203788
+
Leu
CAG
[ENA]
¡û
>W1610014730
AONG01000003
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
214955
215041
+
Leu
CAG
[ENA]
¡û
>W1710011620
AONG01000003
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
203702
203788
+
Leu
CAG
[ENA]
¡û
>W1710011621
AONG01000003
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
214955
215041
+
Leu
CAG
[ENA]
¡û
>W1710514199
FNAT01000003
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
289687
289601
-
Leu
CAG
[ENA]
¡û
>W1710587508
FQYO01000004
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
200909
200995
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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