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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77752 (39 seq.)
>C025646
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
877160
877246
+
Leu
CAA
-
¡û
>C025815
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
68750
68664
-
Leu
CAA
[Ensembl]
¡û
>W141070789
ASGQ01000019
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
59903
59817
-
Leu
CAA
[ENA]
¡û
>W141082647
AUNF01000004
Thermotogota
Thermotoga sp. A7A [AUNF]
59365
59279
-
Leu
CAA
[ENA]
¡û
>WENV181408141
OGCH01000695
[OGCH] hot springs metagenome; hot springs
11347
11261
-
Leu
CAA
[ENA]
¢þ
>C08010926
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
68482
68399
-
Leu
CAA
[Ensembl]
¡û
>WENV170676158
LDZR01001265
[LDZR] terrestrial metagenome; oil reservoir sample K2
6220
6306
+
Leu
CAA
[ENA]
¢þ
>WENV170676750
LDZS01002150
[LDZS] terrestrial metagenome; oil reservoir sample K3
5982
6068
+
Leu
CAA
[ENA]
¢þ
>W09106576
AAWB01000031
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
5040
5126
+
Leu
CAA
[ENA]
¡û
>W09107440
ABIJ01000011
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
46622
46536
-
Leu
CAA
[ENA]
¡û
>W09112207
ABXR01000002
Thermotogota
Marinitoga piezophila KA3 [ABXR]
281651
281737
+
Leu
CAA
[ENA]
¡û
>C141011557
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
68449
68363
-
Leu
CAA
-
¡û
>W1910635452
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
428386
428472
+
Leu
CAA
[ENA]
¡û
>W1910635523
LNDE01000004
Thermotogota
Thermotoga sp. KOL6 [LNDE]
68406
68492
+
Leu
CAA
[ENA]
¡û
>C09110649
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
1686117
1686031
-
Leu
CAA
[Ensembl]
¡û
>C151004302
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
68520
68434
-
Leu
CAA
[Ensembl]
¡û
>C151004348
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
68477
68391
-
Leu
CAA
[Ensembl]
¡û
>C151030662
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
68421
68335
-
Leu
CAA
[Ensembl]
¡û
>C151074606
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
877173
877259
+
Leu
CAA
[Ensembl]
¡û
>C151076960
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
877173
877259
+
Leu
CAA
[Ensembl]
¡û
>C151077006
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
877173
877259
+
Leu
CAA
[Ensembl]
¡û
>W10105845
ACXW01000006
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
52905
52819
-
Leu
CAA
[ENA]
¡û
>C10113523
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
68443
68357
-
Leu
CAA
[Ensembl]
¡û
>W11108165
ACXW01000006
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
52905
52819
-
Leu
CAA
[ENA]
¡û
>W11180790
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
456348
456262
-
Leu
CAA
[ENA]
¡û
>W121062175
AJII01000003
Thermotogota
Thermotoga sp. EMP [AJII]
93802
93888
+
Leu
CAA
[ENA]
¡û
>C131012496
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
877174
877260
+
Leu
CAA
-
¡û
>W1610540339
JSFG01000011
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
59634
59548
-
Leu
CAA
[ENA]
¡û
>W1610540397
JSFH01000011
Thermotogota
Thermotoga sp. Mc24 [JSFH]
59575
59489
-
Leu
CAA
[ENA]
¡û
>W1610540431
JSFI01000008
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
59584
59498
-
Leu
CAA
[ENA]
¡û
>W1610540485
JSFJ01000013
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
74718
74804
+
Leu
CAA
[ENA]
¡û
>W1610612904
LGFG01000017
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
6220
6306
+
Leu
CAA
[ENA]
¡û
>W1610613140
LGFM01000019
Thermotogota
Thermotoga sp. 47_83 [LGFM]
5982
6068
+
Leu
CAA
[ENA]
¡û
>W1710643360
JSFG01000011
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
59634
59548
-
Leu
CAA
[ENA]
¡û
>W1710643418
JSFH01000011
Thermotogota
Thermotoga sp. Mc24 [JSFH]
59575
59489
-
Leu
CAA
[ENA]
¡û
>W1710643452
JSFI01000008
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
59584
59498
-
Leu
CAA
[ENA]
¡û
>W1710643506
JSFJ01000013
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
74718
74804
+
Leu
CAA
[ENA]
¡û
>W1710734186
LGFG01000017
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
6220
6306
+
Leu
CAA
[ENA]
¡û
>W1710734347
LGFM01000019
Thermotogota
Thermotoga sp. 47_83 [LGFM]
5982
6068
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK