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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77754 (38 seq.)
>C025640
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
474284
474370
+
Tyr
GTA
-
¡û
>C025809
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
461225
461139
-
Tyr
GTA
[Ensembl]
¡û
>W141070757
ASGQ01000003
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
90985
90899
-
Tyr
GTA
[ENA]
¡û
>WENV181408958
OGCH01027546
[OGCH] hot springs metagenome; hot springs
612
526
-
Tyr
GTA
[ENA]
¢þ
>C08010920
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
479286
479203
-
Tyr
GTA
[Ensembl]
¡û
>WENV170676170
LDZR01001290
[LDZR] terrestrial metagenome; oil reservoir sample K2
5945
6031
+
Tyr
GTA
[ENA]
¢þ
>WENV170676755
LDZS01002155
[LDZS] terrestrial metagenome; oil reservoir sample K3
7657
7743
+
Tyr
GTA
[ENA]
¢þ
>W09106570
AAWB01000023
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
29581
29495
-
Tyr
GTA
[ENA]
¡û
>W09107438
ABIJ01000010
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
27747
27661
-
Tyr
GTA
[ENA]
¡û
>W09112230
ABXR01000015
Thermotogota
Marinitoga piezophila KA3 [ABXR]
51129
51215
+
Tyr
GTA
[ENA]
¡û
>C141011551
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
471333
471247
-
Tyr
GTA
-
¡û
>W1910635446
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
24907
24993
+
Tyr
GTA
[ENA]
¡û
>W1910635504
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
242855
242941
+
Tyr
GTA
[ENA]
¡û
>C09110672
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
214544
214458
-
Tyr
GTA
[Ensembl]
¡û
>C151004296
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
479149
479063
-
Tyr
GTA
[Ensembl]
¡û
>C151004342
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
470640
470554
-
Tyr
GTA
[Ensembl]
¡û
>C151030656
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
491999
491913
-
Tyr
GTA
[Ensembl]
¡û
>C151074600
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
474289
474375
+
Tyr
GTA
[Ensembl]
¡û
>C151076954
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
474289
474375
+
Tyr
GTA
[Ensembl]
¡û
>C151077000
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
474289
474375
+
Tyr
GTA
[Ensembl]
¡û
>W10105834
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
49553
49639
+
Tyr
GTA
[ENA]
¡û
>C10113481
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
228553
228639
+
Tyr
GTA
[Ensembl]
¡û
>W11108154
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
49553
49639
+
Tyr
GTA
[ENA]
¡û
>W11180784
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
859232
859146
-
Tyr
GTA
[ENA]
¡û
>W121062165
AJII01000002
Thermotogota
Thermotoga sp. EMP [AJII]
17746
17832
+
Tyr
GTA
[ENA]
¡û
>C131012490
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
474289
474375
+
Tyr
GTA
-
¡û
>W1610540350
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
51907
51821
-
Tyr
GTA
[ENA]
¡û
>W1610540405
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
313126
313040
-
Tyr
GTA
[ENA]
¡û
>W1610540441
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
289474
289388
-
Tyr
GTA
[ENA]
¡û
>W1610540474
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49670
49756
+
Tyr
GTA
[ENA]
¡û
>W1610612916
LGFG01000042
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
5945
6031
+
Tyr
GTA
[ENA]
¡û
>W1610613145
LGFM01000024
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7657
7743
+
Tyr
GTA
[ENA]
¡û
>W1710643371
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
51907
51821
-
Tyr
GTA
[ENA]
¡û
>W1710643426
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
313126
313040
-
Tyr
GTA
[ENA]
¡û
>W1710643462
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
289474
289388
-
Tyr
GTA
[ENA]
¡û
>W1710643495
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49670
49756
+
Tyr
GTA
[ENA]
¡û
>W1710734198
LGFG01000042
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
5945
6031
+
Tyr
GTA
[ENA]
¡û
>W1710734352
LGFM01000024
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7657
7743
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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