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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77761 (18 seq.)
>A171000085
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
559074
559158
+
Leu
GAG
-
¡û
>A171000894
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
952266
952350
+
Leu
GAG
-
¡û
>A171000954
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
1913310
1913226
-
Leu
GAG
-
¡û
>A171002273
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
589414
589330
-
Leu
GAG
-
¡û
>A171006569
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
1158620
1158536
-
Leu
GAG
-
¡û
>A171007685
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
540485
540401
-
Leu
GAG
-
¡û
>A171007697
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
948579
948663
+
Leu
GAG
-
¡û
>WENV180003578
FLNZ01006662
[FLNZ] bioreactor metagenome; Moose rumen
334
248
-
Leu
GAG
[ENA]
¢þ
>WENV180683621
OCVV012843919
[OCVV] gut metagenome; gut
187
273
+
Leu
GAG
[ENA]
¢þ
>WENV180683622
OCVV012843919
[OCVV] gut metagenome; gut
187
273
+
Leu
GAG
[ENA]
¢þ
>WENV181229633
OFEK01000013
[OFEK] activated sludge metagenome; Anaerobic digester
172592
172676
+
Leu
GAG
[ENA]
¢þ
>At1648
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
568080
568163
+
Leu
GAG
[Ensembl]
¡û
>WENV170676686
LDZS01001903
[LDZS] terrestrial metagenome; oil reservoir sample K3
12953
12869
-
Leu
GAG
[ENA]
¢þ
>WENV170678286
LDZT01013093
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2393
2309
-
Leu
GAG
[ENA]
¢þ
>WENV170688914
LFRM01268296
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
121
35
-
Leu
GAG
[ENA]
¢þ
>WENV170717344
LSQX01032445
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1241
1155
-
Leu
GAG
[ENA]
¢þ
>W1910230536
FOTL01000008
Euryarchaeota
Methanobrevibacter olleyae DSM 16632 [FOTL]
16651
16735
+
Leu
GAG
[ENA]
¡û
>W1911722787
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
668663
668579
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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