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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77857 (35 seq.)
>W1710806143
LKAQ01000005
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
247047
247133
+
Leu
GAG
[ENA]
¡û
>W131224583
AUCX01000014
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
2383
2297
-
Leu
GAG
[ENA]
¡û
>W131224584
AUCX01000014
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
470
384
-
Leu
GAG
[ENA]
¡û
>W131224839
AUDC01000008
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
360197
360283
+
Leu
GAG
[ENA]
¡û
>WENV180589497
OCOR01086390
[OCOR] marine metagenome; ENVO:00002042
10
96
+
Leu
GAG
[ENA]
¢þ
>WENV183706937
PDWI01006005
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15322
15408
+
Leu
GAG
[ENA]
¢þ
>WENV183721321
PDWJ01064237
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1555
1469
-
Leu
GAG
[ENA]
¢þ
>WENV183747272
PPCM01000637
[PPCM] marine sediment metagenome; marine sediment
384
298
-
Leu
GAG
[ENA]
¢þ
>WENV183747273
PPCM01000637
[PPCM] marine sediment metagenome; marine sediment
92
6
-
Leu
GAG
[ENA]
¢þ
>WENV183747509
PPCM01003623
[PPCM] marine sediment metagenome; marine sediment
3894
3980
+
Leu
GAG
[ENA]
¢þ
>WENV183747510
PPCM01003623
[PPCM] marine sediment metagenome; marine sediment
4186
4272
+
Leu
GAG
[ENA]
¢þ
>WENV170418951
CEUM01083224
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
257
171
-
Leu
GAG
[ENA]
¢þ
>WENV170437797
CEUU01068020
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
175
261
+
Leu
GAG
[ENA]
¢þ
>WENV170440341
CEUV01090466
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
173
259
+
Leu
GAG
[ENA]
¢þ
>WENV170469736
CEVF01138400
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
874
960
+
Leu
GAG
[ENA]
¢þ
>WENV170896329
MDTD01093894
[MDTD] marine metagenome; seawater
37041
37127
+
Leu
GAG
[ENA]
¢þ
>WENV170896330
MDTD01093894
[MDTD] marine metagenome; seawater
37253
37339
+
Leu
GAG
[ENA]
¢þ
>C181227017
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
440849
440763
-
Leu
GAG
-
¡û
>C181227018
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
440637
440551
-
Leu
GAG
-
¡û
>W09118012
ACCN01000007
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
107732
107818
+
Leu
GAG
[ENA]
¡û
>W09118013
ACCN01000007
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
107950
108036
+
Leu
GAG
[ENA]
¡û
>C09104203
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2121324
2121410
+
Leu
GAG
[Ensembl]
¡û
>C09104204
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2121542
2121628
+
Leu
GAG
[Ensembl]
¡û
>W1911738004
QTZO01000003
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
139300
139214
-
Leu
GAG
[ENA]
¡û
>W10111359
ADDI01000002
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
87925
87839
-
Leu
GAG
[ENA]
¡û
>C11106879
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1736751
1736665
-
Leu
GAG
[Ensembl]
¡û
>W11114302
ADDI01000002
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
87925
87839
-
Leu
GAG
[ENA]
¡û
>W11149100
AEUJ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
496737
496823
+
Leu
GAG
[ENA]
¡û
>C121008968
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
496737
496823
+
Leu
GAG
[Ensembl]
¡û
>C161068275
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2679598
2679512
-
Leu
GAG
[Ensembl]
¡û
>W1610046032
BBCB01000001
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
140995
141081
+
Leu
GAG
[ENA]
¡û
>W1610046033
BBCB01000001
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
141704
141790
+
Leu
GAG
[ENA]
¡û
>C131017911
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
475981
476067
+
Leu
GAG
[Ensembl]
¡û
>W1710042828
BBCB01000001
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
140995
141081
+
Leu
GAG
[ENA]
¡û
>W1710042829
BBCB01000001
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
141704
141790
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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