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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779589 (89 seq.)
>W1710870436
LMKM01000037
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
161180
161109
-
Trp
CCA
[ENA]
¡û
>W1710871266
LMLE01000006
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
70753
70826
+
Trp
CCA
[ENA]
¡û
>W1710876345
LMPD01000003
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
692490
692419
-
Trp
CCA
[ENA]
¡û
>W1710877070
LMPU01000009
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
389114
389041
-
Trp
CCA
[ENA]
¡û
>W1710888313
LMZQ01000006
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
260160
260089
-
Trp
CCA
[ENA]
¡û
>W131156282
AQPN01000139
Bacteroidota
Arcticibacter svalbardensis MN12-7 [AQPN]
17711
17640
-
Trp
CCA
[ENA]
¡û
>W1711179125
LWHJ01000011
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
75672
75745
+
Trp
CCA
[ENA]
¡û
>W1711338630
MBTF01000039
Bacteroidota
Mucilaginibacter pedocola [MBTF]
79308
79237
-
Trp
CCA
[ENA]
¡û
>W131234997
AULF01000009
Bacteroidota
Pedobacter glucosidilyticus DSM 23534 [AULF]
140087
140160
+
Trp
CCA
[ENA]
¡û
>W1711354796
MDFN01000030
Bacteroidota
Arcticibacter eurypsychrophilus [MDFN]
60369
60298
-
Trp
CCA
[ENA]
¡û
>W1711360556
MDJS01000001
Bacteroidota
Mucilaginibacter sp. PPCGB 2223 [MDJS]
2335816
2335743
-
Trp
CCA
[ENA]
¡û
>W1711629929
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
604214
604287
+
Trp
CCA
[ENA]
¡û
>W1712082078
NHOT01000013
Bacteroidota
Pedobacter sp. AJM [NHOT]
87916
87845
-
Trp
CCA
[ENA]
¡û
>C171057637
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3287005
3287078
+
Trp
CCA
-
¡û
>C171117322
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
715989
716060
+
Trp
CCA
-
¡û
>W141027917
AKZJ01000001
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
497386
497459
+
Trp
CCA
[ENA]
¡û
>W141075087
ASZT01000697
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
12389
12318
-
Trp
CCA
[ENA]
¡û
>W141142880
AWRU01000032
Bacteroidota
Pedobacter sp. V48 [AWRU]
33176
33103
-
Trp
CCA
[ENA]
¡û
>W141187591
AYMG01000010
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
387951
387880
-
Trp
CCA
[ENA]
¡û
>W141222960
BACV01000825
Bacteroidota
Cytophagales bacterium B6 B6 [BACV]
4140
4211
+
Trp
CCA
[ENA]
¡û
>W141292044
JAUG01000097
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
16878
16807
-
Trp
CCA
[ENA]
¡û
>W141350095
JCKI01000002
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
475353
475424
+
Trp
CCA
[ENA]
¡û
>WENV183743532
PJUJ01004157
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1071
1142
+
Trp
CCA
[ENA]
¢þ
>WENV183745308
PJUL01022145
[PJUL] feces metagenome; Chicken feces enriched on filter paper
325
254
-
Trp
CCA
[ENA]
¢þ
>WENV170559402
CXWL01121640
[CXWL] groundwater metagenome; biofilm material
642
571
-
Trp
CCA
[ENA]
¢þ
>WENV171003215
NNBT01002424
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1838
1909
+
Trp
CCA
[ENA]
¢þ
>C181094360
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
5221638
5221709
+
Trp
CCA
-
¡û
>C191096559
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
4512057
4511986
-
Trp
CCA
-
¡û
>W1910378060
FUKX01000027
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
12245
12174
-
Trp
CCA
[ENA]
¡û
>W1911647396
QAJL01000002
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
251257
251186
-
Trp
CCA
[ENA]
¡û
>W1911647662
QAJQ01000014
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
84445
84372
-
Trp
CCA
[ENA]
¡û
>W1911747186
QWDC01000001
Bacteroidota
Mucilaginibacter conchicola MYSH2 [QWDC]
1722292
1722221
-
Trp
CCA
[ENA]
¡û
>W1810090290
PGFJ01000001
Bacteroidota
Mucilaginibacter auburnensis DSM 28175 [PGFJ]
1162919
1162990
+
Trp
CCA
[ENA]
¡û
>W1810477216
QAOQ01000002
Bacteroidota
Mucilaginibacter yixingensis DSM 26809 [QAOQ]
218818
218747
-
Trp
CCA
[ENA]
¡û
>W1810503682
QBKH01000010
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
12223
12152
-
Trp
CCA
[ENA]
¡û
>W1810503880
QBKL01000016
Bacteroidota
Pedobacter sp. OK291 [QBKL]
570505
570434
-
Trp
CCA
[ENA]
¡û
>W1810503925
QBKM01000006
Bacteroidota
Pedobacter sp. YR016 [QBKM]
115290
115361
+
Trp
CCA
[ENA]
¡û
>W1810584228
QEYR01000017
Bacteroidota
Mucilaginibacter rubeus P1 [QEYR]
124369
124440
+
Trp
CCA
[ENA]
¡û
>W1810587248
QFKU01000012
Bacteroidota
Mucilaginibacter kameinonensis P4 [QFKU]
56023
55952
-
Trp
CCA
[ENA]
¡û
>W1810587295
QFKV01000021
Bacteroidota
Mucilaginibacter rubeus P3 [QFKV]
49977
49906
-
Trp
CCA
[ENA]
¡û
>W1810587337
QFKW01000022
Bacteroidota
Mucilaginibacter rubeus P2 [QFKW]
42190
42119
-
Trp
CCA
[ENA]
¡û
>W1810594603
QGDC01000001
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
483986
483915
-
Trp
CCA
[ENA]
¡û
>W1810597104
QGHA01000004
Bacteroidota
Mucilaginibacter oryzae DSM 19975 [QGHA]
237271
237342
+
Trp
CCA
[ENA]
¡û
>W1810606115
QGNY01000004
Bacteroidota
Pedobacter paludis R-8 [QGNY]
343779
343708
-
Trp
CCA
[ENA]
¡û
>W1810676210
QKLV01000009
Bacteroidota
Mucilaginibacter sp. OV119 [QKLV]
42785
42714
-
Trp
CCA
[ENA]
¡û
>W1810693898
QLLR01000017
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
54508
54579
+
Trp
CCA
[ENA]
¡û
>W1810720079
QNQU01000006
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
190856
190783
-
Trp
CCA
[ENA]
¡û
>W1810753580
QPCG01000001
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
235510
235581
+
Trp
CCA
[ENA]
¡û
>W1810761074
QPKV01000004
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
546160
546231
+
Trp
CCA
[ENA]
¡û
>W1810885507
QUNJ01000004
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
618059
618130
+
Trp
CCA
[ENA]
¡û
>W1810885600
QUNL01000005
Bacteroidota
Pedobacter sp. OV280 [QUNL]
170669
170598
-
Trp
CCA
[ENA]
¡û
>W1810917801
QWDE01000003
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
379566
379495
-
Trp
CCA
[ENA]
¡û
>C151047339
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
899385
899456
+
Trp
CCA
[Ensembl]
¡û
>W1511206113
JMTN01000009
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
13363
13436
+
Trp
CCA
[ENA]
¡û
>W1511390991
JSYN01000038
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
12004
12077
+
Trp
CCA
[ENA]
¡û
>W1511509406
JXRA01000012
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
3190
3117
-
Trp
CCA
[ENA]
¡û
>W1511646558
LECU01000003
Bacteroidota
Pedobacter sp. BMA [LECU]
21486
21415
-
Trp
CCA
[ENA]
¡û
>C161049159
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
5430298
5430225
-
Trp
CCA
[Ensembl]
¡û
>C161073041
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
4082671
4082598
-
Trp
CCA
[Ensembl]
¡û
>C161077154
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
2307929
2308000
+
Trp
CCA
[Ensembl]
¡û
>W121063666
AJLG01000062
Bacteroidota
Pedobacter agri PB92 [AJLG]
11667
11740
+
Trp
CCA
[ENA]
¡û
>W1610612087
LGEK01000052
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
2464
2393
-
Trp
CCA
[ENA]
¡û
>W1610612130
LGEL01000049
Bacteroidota
Pedobacter panaciterrae [LGEL]
5577
5650
+
Trp
CCA
[ENA]
¡û
>W1610732782
LMKM01000037
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
161180
161109
-
Trp
CCA
[ENA]
¡û
>W1610733612
LMLE01000006
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
70753
70826
+
Trp
CCA
[ENA]
¡û
>W1610738691
LMPD01000003
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
692490
692419
-
Trp
CCA
[ENA]
¡û
>W1610739416
LMPU01000009
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
389114
389041
-
Trp
CCA
[ENA]
¡û
>W1610748691
LMZQ01000006
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
260160
260089
-
Trp
CCA
[ENA]
¡û
>W1610987077
LWHJ01000011
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
75672
75745
+
Trp
CCA
[ENA]
¡û
>W1710505647
FMTV01000003
Bacteroidota
Mucilaginibacter sp. NFR10 [FMTV]
365476
365405
-
Trp
CCA
[ENA]
¡û
>W1710512314
FMZH01000023
Bacteroidota
Pedobacter soli [FMZH]
12553
12626
+
Trp
CCA
[ENA]
¡û
>W1710513655
FNAI01000002
Bacteroidota
Mucilaginibacter pineti [FNAI]
89547
89618
+
Trp
CCA
[ENA]
¡û
>W1710516002
FNCG01000004
Bacteroidota
Mucilaginibacter gossypii [FNCG]
407829
407900
+
Trp
CCA
[ENA]
¡û
>W1710516067
FNCH01000016
Bacteroidota
Pedobacter terrae [FNCH]
50482
50555
+
Trp
CCA
[ENA]
¡û
>W1710519691
FNEX01000016
Bacteroidota
Pedobacter sp. ok626 [FNEX]
162164
162237
+
Trp
CCA
[ENA]
¡û
>W1710522107
FNGY01000013
Bacteroidota
Pedobacter steynii [FNGY]
11260
11333
+
Trp
CCA
[ENA]
¡û
>W1710522571
FNHH01000004
Bacteroidota
Daejeonella rubra ruber [FNHH]
164924
164853
-
Trp
CCA
[ENA]
¡û
>W1710525884
FNJV01000011
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
42345
42274
-
Trp
CCA
[ENA]
¡û
>W1710533318
FNRA01000011
Bacteroidota
Pedobacter hartonius [FNRA]
117271
117344
+
Trp
CCA
[ENA]
¡û
>W1710546826
FOCL01000006
Bacteroidota
Mucilaginibacter gossypiicola [FOCL]
356256
356327
+
Trp
CCA
[ENA]
¡û
>W1710548309
FODR01000002
Bacteroidota
Mucilaginibacter sp. OK283 [FODR]
508698
508769
+
Trp
CCA
[ENA]
¡û
>W1710551677
FOGG01000011
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
77762
77689
-
Trp
CCA
[ENA]
¡û
>W1710555456
FOJM01000006
Bacteroidota
Pedobacter suwonensis [FOJM]
243467
243538
+
Trp
CCA
[ENA]
¡û
>W1710577020
FPAM01000001
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
586324
586251
-
Trp
CCA
[ENA]
¡û
>W1710583253
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
891568
891641
+
Trp
CCA
[ENA]
¡û
>W1710595951
FTMG01000009
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
208468
208539
+
Trp
CCA
[ENA]
¡û
>W1710606801
FWYB01000011
Bacteroidota
Pedobacter nyackensis [FWYB]
32549
32622
+
Trp
CCA
[ENA]
¡û
>W1710733593
LGEK01000052
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
2464
2393
-
Trp
CCA
[ENA]
¡û
>W1710733636
LGEL01000049
Bacteroidota
Pedobacter panaciterrae [LGEL]
5577
5650
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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