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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780032 (58 seq.)
>W1710811944
LKIW01000132
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
89180
89107
-
Cys
GCA
[ENA]
¡û
>W1711005485
LQNP01000003
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
219537
219464
-
Cys
GCA
[ENA]
¡û
>W131171873
ARGN01000047
Betaproteobacteria
Chitiniphilus shinanonensis DSM 23277 [ARGN]
144509
144436
-
Cys
GCA
[ENA]
¡û
>W1711484380
MKCR01000001
Betaproteobacteria
Chromobacterium amazonense [MKCR]
36929
36856
-
Cys
GCA
[ENA]
¡û
>W1711484508
MKCS01000001
Betaproteobacteria
Chromobacterium sphagni Feb-37 [MKCS]
2616220
2616293
+
Cys
GCA
[ENA]
¡û
>W1711484592
MKCT01000017
Betaproteobacteria
Chromobacterium sphagni 14B-1 [MKCT]
427581
427654
+
Cys
GCA
[ENA]
¡û
>W1711664325
MQZX01000005
Betaproteobacteria
Chromobacterium violaceum pseudoviolaceum [MQZX]
106
179
+
Cys
GCA
[ENA]
¡û
>W1711664364
MQZY01000013
Betaproteobacteria
Chromobacterium aquaticum [MQZY]
101
174
+
Cys
GCA
[ENA]
¡û
>W1711664396
MQZZ01000013
Betaproteobacteria
Chromobacterium subtsugae [MQZZ]
101
174
+
Cys
GCA
[ENA]
¡û
>W1711747388
MUKQ01000010
Betaproteobacteria
Chromobacterium violaceum [MUKQ]
179397
179470
+
Cys
GCA
[ENA]
¡û
>W1711747470
MUKR01000009
Betaproteobacteria
Chromobacterium violaceum [MUKR]
29380
29307
-
Cys
GCA
[ENA]
¡û
>W1711747559
MUKS01000011
Betaproteobacteria
Chromobacterium violaceum [MUKS]
178726
178799
+
Cys
GCA
[ENA]
¡û
>W1711747605
MUKT01000006
Betaproteobacteria
Chromobacterium haemolyticum [MUKT]
140949
140876
-
Cys
GCA
[ENA]
¡û
>W1711747718
MUKU01000057
Betaproteobacteria
Chromobacterium haemolyticum [MUKU]
17314
17387
+
Cys
GCA
[ENA]
¡û
>W1711747753
MUKV01000010
Betaproteobacteria
Chromobacterium haemolyticum [MUKV]
105424
105497
+
Cys
GCA
[ENA]
¡û
>W1711747834
MUKW01000008
Betaproteobacteria
Chromobacterium violaceum [MUKW]
179359
179432
+
Cys
GCA
[ENA]
¡û
>W1711747931
MUKX01000011
Betaproteobacteria
Chromobacterium violaceum [MUKX]
8865
8792
-
Cys
GCA
[ENA]
¡û
>W1712081940
NHOO01000004
Betaproteobacteria
Chromobacterium violaceum [NHOO]
84868
84795
-
Cys
GCA
[ENA]
¡û
>W1712110398
NJIE01000027
Betaproteobacteria
Xenophilus sp. AP218F [NJIE]
55049
54976
-
Cys
GCA
[ENA]
¡û
>C171066270
CP017707
Betaproteobacteria
Chromobacterium vaccinii 21-1 [CP017707]
4185474
4185547
+
Cys
GCA
-
¡û
>C007290
AE016825
Betaproteobacteria
Chromobacterium violaceum ATCC 12472 [AE016825]
1377958
1378031
+
Cys
GCA
[Ensembl]
¡û
>WENV180099465
NMRC01006561
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
411
338
-
Cys
GCA
[ENA]
¢þ
>W141106138
AVPH01000224
Betaproteobacteria
Pseudogulbenkiania ferrooxidans EGD-HP2 [AVPH]
93657
93730
+
Cys
GCA
[ENA]
¡û
>WENV170553496
CXWK01020865
[CXWK] wastewater metagenome; activated sludge
1372
1299
-
Cys
GCA
[ENA]
¢þ
>C181062387
CP022344
Betaproteobacteria
Chromobacterium vaccinii XC0014 [CP022344]
2225012
2225085
+
Cys
GCA
-
¡û
>C181093180
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
1261242
1261315
+
Cys
GCA
-
¡û
>C181179637
CP029495
Betaproteobacteria
Chromobacterium phragmitis IIBBL 112-1 [CP029495]
2939640
2939713
+
Cys
GCA
-
¡û
>C181180311
CP029554
Betaproteobacteria
Chromobacterium phragmitis IIBBL 274-1 [CP029554]
4087786
4087859
+
Cys
GCA
-
¡û
>C191083727
CP031968
Betaproteobacteria
Chromobacterium rhizoryzae JP2-74 [CP031968]
3738892
3738819
-
Cys
GCA
-
¡û
>C191198999
LR134182
Betaproteobacteria
Chromobacterium violaceum NCTC9695 [LR134182]
1345796
1345869
+
Cys
GCA
-
¡û
>W141778957
JONK01000018
Betaproteobacteria
Chromobacterium haemolyticum DSM 19808 [JONK]
110307
110380
+
Cys
GCA
[ENA]
¡û
>W1910647347
LXRL01000155
Betaproteobacteria
Chromobacterium haemolyticum IR17 [LXRL]
118
191
+
Cys
GCA
[ENA]
¡û
>W1910803501
MTBD01000010
Betaproteobacteria
Chromobacterium amazonense 56AF [MTBD]
64468
64541
+
Cys
GCA
[ENA]
¡û
>W1810184699
PKBZ01000001
Betaproteobacteria
Chromobacterium violaceum ATCC 315322 [PKBZ]
3873154
3873227
+
Cys
GCA
[ENA]
¡û
>W1810240328
PPTF01000043
Betaproteobacteria
Chromobacterium sinusclupearum MWU13-2610 [PPTF]
35886
35813
-
Cys
GCA
[ENA]
¡û
>W1810266828
PQWB01000010
Betaproteobacteria
Chromobacterium alticapitis MWU14-2602 [PQWB]
108370
108443
+
Cys
GCA
[ENA]
¡û
>W1810483106
QARW01000002
Betaproteobacteria
Chromobacterium haemolyticum NRRL B-11053 [QARW]
4134259
4134186
-
Cys
GCA
[ENA]
¡û
>W1810483141
QARX01000001
Betaproteobacteria
Chromobacterium sp. Panama [QARX]
1015263
1015336
+
Cys
GCA
[ENA]
¡û
>W1511344544
JRFR01000008
Betaproteobacteria
Chromobacterium haemolyticum T124 [JRFR]
131808
131881
+
Cys
GCA
[ENA]
¡û
>W1511399998
JTGE01000043
Betaproteobacteria
Chromobacterium piscinae ND17 [JTGE]
51670
51743
+
Cys
GCA
[ENA]
¡û
>W1511480988
JWJN01000011
Betaproteobacteria
Chromobacterium subtsugae F49 [JWJN]
219528
219455
-
Cys
GCA
[ENA]
¡û
>W1511484282
JWPW01000023
Betaproteobacteria
Chromobacterium violaceum GN5 [JWPW]
97038
96965
-
Cys
GCA
[ENA]
¡û
>W1511525836
JYGI01000021
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
132874
132801
-
Cys
GCA
[ENA]
¡û
>W1511544154
JZJJ01000020
Betaproteobacteria
Chromobacterium vaccinii MWU328 [JZJJ]
5176
5103
-
Cys
GCA
[ENA]
¡û
>W1511544283
JZJL01000019
Betaproteobacteria
Chromobacterium vaccinii MWU205 [JZJL]
47734
47661
-
Cys
GCA
[ENA]
¡û
>W1511622812
LCWO01000010
Betaproteobacteria
Chromobacterium subtsugae MWU3525 [LCWO]
121877
121950
+
Cys
GCA
[ENA]
¡û
>W1511622869
LCWP01000007
Betaproteobacteria
Chromobacterium subtsugae MWU2920 [LCWP]
171877
171950
+
Cys
GCA
[ENA]
¡û
>W1511622985
LCWQ01000019
Betaproteobacteria
Chromobacterium subtsugae MWU2576 [LCWQ]
95121
95048
-
Cys
GCA
[ENA]
¡û
>W1511640615
LDUI01000067
Betaproteobacteria
Chromobacterium sp. LK1 [LDUI]
11916
11843
-
Cys
GCA
[ENA]
¡û
>W1511640913
LDUM01000024
Betaproteobacteria
Chromobacterium violaceum LK6 [LDUM]
132443
132370
-
Cys
GCA
[ENA]
¡û
>W1511641261
LDUR01000004
Betaproteobacteria
Chromobacterium sp. LK11 [LDUR]
136776
136849
+
Cys
GCA
[ENA]
¡û
>W1511641452
LDUT01000021
Betaproteobacteria
Chromobacterium violaceum LK15 [LDUT]
214533
214606
+
Cys
GCA
[ENA]
¡û
>W1511641499
LDUU01000006
Betaproteobacteria
Chromobacterium violaceum LK17 [LDUU]
214536
214609
+
Cys
GCA
[ENA]
¡û
>W1511641768
LDUX01000002
Betaproteobacteria
Chromobacterium violaceum LK30 [LDUX]
140890
140963
+
Cys
GCA
[ENA]
¡û
>W11187326
CAEE01000722
Betaproteobacteria
Chromobacterium haemolyticum C-61 [CAEE]
9963
9890
-
Cys
GCA
[ENA]
¡û
>W121126961
CAEE01000722
Betaproteobacteria
Chromobacterium haemolyticum C-61 [CAEE]
9963
9890
-
Cys
GCA
[ENA]
¡û
>W1610676041
LKIW01000132
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
89180
89107
-
Cys
GCA
[ENA]
¡û
>W1610856135
LQNP01000003
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
219537
219464
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK