This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780081 (16 seq.)
>WENV180022326
FTFY01000870
[FTFY] metagenome; soil
12278
12205
-
Gly
CCC
[ENA]
¢þ
>WENV180026501
FTIU01000292
[FTIU] metagenome; soil
5167
5240
+
Gly
CCC
[ENA]
¢þ
>WENV180029704
FTJL01001150
[FTJL] metagenome; soil
6508
6435
-
Gly
CCC
[ENA]
¢þ
>WENV170559332
CXWL01119670
[CXWL] groundwater metagenome; biofilm material
1576
1649
+
Gly
CCC
[ENA]
¢þ
>WENV170559446
CXWL01123897
[CXWL] groundwater metagenome; biofilm material
1575
1648
+
Gly
CCC
[ENA]
¢þ
>W1911572358
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1401247
1401320
+
Gly
CCC
[ENA]
¡û
>C151062604
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
4747770
4747843
+
Gly
CCC
[Ensembl]
¡û
>C11105071
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
4323054
4323127
+
Gly
CCC
[Ensembl]
¡û
>C161053592
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
4701796
4701869
+
Gly
CCC
[Ensembl]
¡û
>C161053647
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
3796759
3796832
+
Gly
CCC
-
¡û
>C161053691
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
4676227
4676300
+
Gly
CCC
[Ensembl]
¡û
>C161053743
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
3782005
3782078
+
Gly
CCC
[Ensembl]
¡û
>C161053791
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
4695522
4695595
+
Gly
CCC
[Ensembl]
¡û
>W1710530357
FNOR01000005
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
12483
12410
-
Gly
CCC
[ENA]
¡û
>W1710557543
FOLC01000030
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
25406
25333
-
Gly
CCC
[ENA]
¡û
>W1710564242
FOQI01000028
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
26270
26197
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK