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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780096 (48 seq.)
>W1711078218
LSMR01000048
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
888
815
-
Cys
GCA
[ENA]
¡û
>W131159077
AQUT01000005
Gammaproteobacteria
Teredinibacter turnerae T8602 [AQUT]
173468
173541
+
Cys
GCA
[ENA]
¡û
>W131161667
AQXX01000109
Gammaproteobacteria
Hahella ganghwensis DSM 17046 [AQXX]
64133
64206
+
Cys
GCA
[ENA]
¡û
>W131164145
ARAH01000015
Gammaproteobacteria
Teredinibacter turnerae T7902 [ARAH]
34336
34263
-
Cys
GCA
[ENA]
¡û
>W1711128968
LUTR01000005
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
74763
74690
-
Cys
GCA
[ENA]
¡û
>W1711129051
LUTS01000008
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
72800
72873
+
Cys
GCA
[ENA]
¡û
>W131166970
ARCX01000041
Gammaproteobacteria
Teredinibacter turnerae T0609 [ARCX]
56
129
+
Cys
GCA
[ENA]
¡û
>W131179303
ARMG01000029
Gammaproteobacteria
Teredinibacter turnerae T8402 [ARMG]
120399
120326
-
Cys
GCA
[ENA]
¡û
>W131219186
ATYI01000015
Gammaproteobacteria
Teredinibacter turnerae T8415 [ATYI]
174640
174567
-
Cys
GCA
[ENA]
¡û
>W131228606
AUGB01000019
Gammaproteobacteria
Teredinibacter turnerae T8513 [AUGB]
16080
16007
-
Cys
GCA
[ENA]
¡û
>W1711666814
MRCI01000001
Gammaproteobacteria
Neptunomonas phycophila [MRCI]
1799797
1799724
-
Cys
GCA
[ENA]
¡û
>W1711666849
MRCJ01000003
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
298357
298284
-
Cys
GCA
[ENA]
¡û
>C171118696
CP021425
Gammaproteobacteria
Oleiphilus messinensis ME102 [CP021425]
2417200
2417273
+
Cys
GCA
-
¡û
>C010450
CP000155
Gammaproteobacteria
Hahella chejuensis KCTC 2396 [CP000155]
2633289
2633216
-
Cys
GCA
[Ensembl]
¡û
>w015108
AAOW01000037
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
16313
16388
+
Cys
GCA
[ENA]
¡û
>WENV181305899
OFII01000764
[OFII] marine metagenome; seawater
1365
1292
-
Cys
GCA
[ENA]
¢þ
>WENV181317968
OFJY01062173
[OFJY] marine metagenome; seawater
265
192
-
Cys
GCA
[ENA]
¢þ
>WENV182541164
OJAS01000566
[OJAS] seawater metagenome; Sea water
230
157
-
Cys
GCA
[ENA]
¢þ
>WENV182564912
OJEF01014988
[OJEF] seawater metagenome; Sea water
1315
1242
-
Cys
GCA
[ENA]
¢þ
>WENV182577153
OJGD01000002
[OJGD] seawater metagenome; Sea water
504502
504429
-
Cys
GCA
[ENA]
¢þ
>WENV182584734
OJHG01007166
[OJHG] seawater metagenome; Sea water
1292
1365
+
Cys
GCA
[ENA]
¢þ
>WENV182591910
OJIO01015831
[OJIO] seawater metagenome; Sea water
1164
1237
+
Cys
GCA
[ENA]
¢þ
>WENV183057442
OLHL01002264
[OLHL] seawater metagenome; Sea water
790
717
-
Cys
GCA
[ENA]
¢þ
>WENV183704635
PDWI01000434
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10919
10992
+
Cys
GCA
[ENA]
¢þ
>WENV183717007
PDWJ01000365
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
10919
10992
+
Cys
GCA
[ENA]
¢þ
>WENV183717297
PDWJ01000700
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
17641
17714
+
Cys
GCA
[ENA]
¢þ
>WENV183717913
PDWJ01001956
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3449
3522
+
Cys
GCA
[ENA]
¢þ
>WENV183718785
PDWJ01006561
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4497
4570
+
Cys
GCA
[ENA]
¢þ
>WENV170463054
CEVD01108008
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
155
228
+
Cys
GCA
[ENA]
¢þ
>C191132308
CP034836
Gammaproteobacteria
Hahella sp. KA22 [CP034836]
2612462
2612535
+
Cys
GCA
-
¡û
>C191143770
CP035490
Gammaproteobacteria
Hahella sp. KA22 [CP035490]
3184372
3184445
+
Cys
GCA
-
¡û
>W141565084
JIBG01000019
Gammaproteobacteria
Teredinibacter turnerae 1133Y.S.0a.04 [JIBG]
132416
132343
-
Cys
GCA
[ENA]
¡û
>W1910794432
MRYI01000141
Gammaproteobacteria
Hahella sp. CCB-MM4 [MRYI]
5425
5498
+
Cys
GCA
[ENA]
¡û
>W1910923734
NIHD01000004
Gammaproteobacteria
Marinobacter aromaticivorans D15-8P [NIHD]
224008
224081
+
Cys
GCA
[ENA]
¡û
>W1911283888
NTLB01000006
Gammaproteobacteria
Mangrovitalea sediminis M11-4 [NTLB]
10127
10054
-
Cys
GCA
[ENA]
¡û
>W1810252372
PQGG01000019
Gammaproteobacteria
Marortus luteolus ZX-21 [PQGG]
13928
13855
-
Cys
GCA
[ENA]
¡û
>C151083065
CP011477
Gammaproteobacteria
Spongiibacter sp. IMCC21906 [CP011477]
2183478
2183405
-
Cys
GCA
[Ensembl]
¡û
>C10113897
CP001614
Gammaproteobacteria
Teredinibacter turnerae T7901 [CP001614]
2674479
2674406
-
Cys
GCA
[Ensembl]
¡û
>W1511573597
LANB01000001
Gammaproteobacteria
Cellvibrionaceae bacterium 1162T.S.0a.05 1162T.S.0a.05 [LANB]
3464994
3465067
+
Cys
GCA
[ENA]
¡û
>W1511573641
LANC01000010
Gammaproteobacteria
Teredinibacter turnerae 991H.S.0a.06 [LANC]
285480
285407
-
Cys
GCA
[ENA]
¡û
>W11150181
AEVK01000018
Gammaproteobacteria
gamma proteobacterium IMCC1989 [AEVK]
10710
10783
+
Cys
GCA
[ENA]
¡û
>C161073917
CP014544
Gammaproteobacteria
Zhongshania aliphaticivorans SM-2 [CP014544]
1807342
1807415
+
Cys
GCA
[Ensembl]
¡û
>W121064517
AJMK01000021
Gammaproteobacteria
gamma proteobacterium BDW918 [AJMK]
110049
110122
+
Cys
GCA
[ENA]
¡û
>W1610917234
LSMR01000048
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
888
815
-
Cys
GCA
[ENA]
¡û
>W1610940041
LUTR01000005
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
74763
74690
-
Cys
GCA
[ENA]
¡û
>W1610940124
LUTS01000008
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
72800
72873
+
Cys
GCA
[ENA]
¡û
>WENV080763
ABEF01001271
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
523
598
+
Cys
GCA
[ENA]
>W1710569170
FOUE01000002
Gammaproteobacteria
Marinobacter zhejiangensis [FOUE]
893601
893674
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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