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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780104 (60 seq.)
>W1710873823
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
426604
426531
-
Gln
TTG
[ENA]
¡û
>W1710876089
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
863066
863139
+
Gln
TTG
[ENA]
¡û
>W1710877306
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
1407473
1407400
-
Gln
TTG
[ENA]
¡û
>W131052418
AMYY01000007
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
84321
84394
+
Gln
TTG
[ENA]
¡û
>W131218262
ATXN01000003
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
310383
310456
+
Gln
TTG
[ENA]
¡û
>W1711501729
MKRY01000106
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
6757
6684
-
Gln
TTG
[ENA]
¡û
>W1711718097
MTHE01000001
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
228202
228129
-
Gln
TTG
[ENA]
¡û
>W1712106177
NIVP01000004
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
137532
137459
-
Gln
TTG
[ENA]
¡û
>WENV180013888
FPIC01007296
[FPIC] soil metagenome; Soil
296
369
+
Gln
TTG
[ENA]
¢þ
>WENV181384404
OFRI01000760
[OFRI] wastewater metagenome; Exp Tend VB 90WW
2103
2176
+
Gln
TTG
[ENA]
¢þ
>WENV181402207
OFTY01000236
[OFTY] sludge metagenome; sludge
26314
26241
-
Gln
TTG
[ENA]
¢þ
>WENV181732242
OGQD01018510
[OGQD] human gut metagenome; faeces
687
614
-
Gln
TTG
[ENA]
¢þ
>W141230488
BATC01000093
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
268
341
+
Gln
TTG
[ENA]
¡û
>WENV183727508
PJTP01000009
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
236100
236173
+
Gln
TTG
[ENA]
¢þ
>WENV183728322
PJTQ01000015
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
347190
347117
-
Gln
TTG
[ENA]
¢þ
>WENV183730890
PJTS01001795
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
5386
5313
-
Gln
TTG
[ENA]
¢þ
>WENV183733480
PJTY01002655
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
571
644
+
Gln
TTG
[ENA]
¢þ
>WENV183735560
PJUB01000047
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
116449
116522
+
Gln
TTG
[ENA]
¢þ
>WENV183738912
PJUE01000429
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
24334
24407
+
Gln
TTG
[ENA]
¢þ
>WENV183740155
PJUF01000502
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
5898
5971
+
Gln
TTG
[ENA]
¢þ
>WENV170011384
APMI01062374
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
653
726
+
Gln
TTG
[ENA]
¢þ
>WENV170574364
FLYM01029701
[FLYM] hot springs metagenome; Sediment
1130
1203
+
Gln
TTG
[ENA]
¢þ
>WENV170646007
JQGF01006261
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
912
985
+
Gln
TTG
[ENA]
¢þ
>WENV170646009
JQGF01006263
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
205
278
+
Gln
TTG
[ENA]
¢þ
>WENV170670571
LAHT01051930
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
67
140
+
Gln
TTG
[ENA]
¢þ
>WENV170784219
MCHG01000147
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
21453
21380
-
Gln
TTG
[ENA]
¢þ
>C181056241
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
3250467
3250540
+
Gln
TTG
-
¡û
>C191093998
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2394408
2394481
+
Gln
TTG
-
¡û
>C191134446
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
2593864
2593791
-
Gln
TTG
-
¡û
>C191157403
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
1309515
1309442
-
Gln
TTG
-
¡û
>C191159617
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
1711250
1711323
+
Gln
TTG
-
¡û
>C191166124
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
2019607
2019534
-
Gln
TTG
-
¡û
>C191220420
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
1434251
1434324
+
Gln
TTG
-
¡û
>W141551926
JHOF01000018
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
583010
582937
-
Gln
TTG
[ENA]
¡û
>W1910182687
BJNC01000009
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
78119
78192
+
Gln
TTG
[ENA]
¡û
>W1910374330
FUIE01000049
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
70229
70302
+
Gln
TTG
[ENA]
¡û
>W1910725255
MGLK01000012
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
66170
66243
+
Gln
TTG
[ENA]
¡û
>W1911566737
PCPB01000002
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
289871
289944
+
Gln
TTG
[ENA]
¡û
>W1911566947
PCPF01000002
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
109587
109514
-
Gln
TTG
[ENA]
¡û
>W1911567193
PCPK01000004
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
23368
23295
-
Gln
TTG
[ENA]
¡û
>W1911567292
PCPM01000011
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
95016
94943
-
Gln
TTG
[ENA]
¡û
>W1911567400
PCPO01000010
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
95016
94943
-
Gln
TTG
[ENA]
¡û
>W1911760332
QWTZ01000002
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
587772
587699
-
Gln
TTG
[ENA]
¡û
>W1810000958
BEWU01000007
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
5703
5630
-
Gln
TTG
[ENA]
¡û
>W1810693153
QLLC01000006
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
15812
15739
-
Gln
TTG
[ENA]
¡û
>W11123434
ADUI01000118
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
55842
55769
-
Gln
TTG
[ENA]
¡û
>W1511489449
JWSY01000001
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
120781
120854
+
Gln
TTG
[ENA]
¡û
>W1511547876
JZRG01000012
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
120123
120196
+
Gln
TTG
[ENA]
¡û
>W1511596056
LBNT01000005
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
104874
104801
-
Gln
TTG
[ENA]
¡û
>C161089096
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1049400
1049473
+
Gln
TTG
[Ensembl]
¡û
>C161089806
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
689685
689758
+
Gln
TTG
[Ensembl]
¡û
>W1610074211
BCWM01000004
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
94365
94438
+
Gln
TTG
[ENA]
¡û
>W1610736169
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
426604
426531
-
Gln
TTG
[ENA]
¡û
>W1610738435
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
863066
863139
+
Gln
TTG
[ENA]
¡û
>W1610739652
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
1407473
1407400
-
Gln
TTG
[ENA]
¡û
>WENV081325
ABEF01042786
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
1812
1887
+
Gln
TTG
[ENA]
>W1710071329
BCWM01000004
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
94365
94438
+
Gln
TTG
[ENA]
¡û
>W1710084597
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
118402
118475
+
Gln
TTG
[ENA]
¡û
>W1710527014
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
465402
465475
+
Gln
TTG
[ENA]
¡û
>W1710576185
FOZV01000004
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
138851
138924
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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