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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780159 (80 seq.)
>W1710785184
LJHQ01000021
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
26737
26810
+
Gln
CTG
[ENA]
¡û
>W1710858045
LMAR01000076
Alphaproteobacteria
Bosea thiooxidans [LMAR]
11443
11516
+
Gln
CTG
[ENA]
¡û
>W1710869469
LMJT01000006
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
135286
135359
+
Gln
CTG
[ENA]
¡û
>W1710869527
LMJU01000015
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
255257
255184
-
Gln
CTG
[ENA]
¡û
>W1710869648
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
328312
328385
+
Gln
CTG
[ENA]
¡û
>W1710879525
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
588519
588592
+
Gln
CTG
[ENA]
¡û
>W1710893375
LNER01000559
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
800
727
-
Gln
CTG
[ENA]
¡û
>W1711072934
LSIB01000064
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
164567
164494
-
Gln
CTG
[ENA]
¡û
>W1711073152
LSIG01000229
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
34182
34255
+
Gln
CTG
[ENA]
¡û
>W1711073287
LSIK01000062
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
1678
1605
-
Gln
CTG
[ENA]
¡û
>W1711073811
LSIY01000090
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
36162
36235
+
Gln
CTG
[ENA]
¡û
>W1711074359
LSJL01000134
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
1674
1601
-
Gln
CTG
[ENA]
¡û
>W1711074517
LSJP01000312
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
36152
36225
+
Gln
CTG
[ENA]
¡û
>W1711074610
LSJR01000305
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
1678
1605
-
Gln
CTG
[ENA]
¡û
>W1711074714
LSJU01000378
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
629
702
+
Gln
CTG
[ENA]
¡û
>W1711074760
LSJV01000074
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
9129
9056
-
Gln
CTG
[ENA]
¡û
>W1711074843
LSJX01000066
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
35582
35655
+
Gln
CTG
[ENA]
¡û
>W1711075575
LSKN01000217
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
36172
36245
+
Gln
CTG
[ENA]
¡û
>W1711502372
MKSQ01000007
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
486430
486503
+
Gln
CTG
[ENA]
¡û
>W1711505915
MKVY01000033
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
8893
8820
-
Gln
CTG
[ENA]
¡û
>C171049967
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
3156605
3156678
+
Gln
CTG
-
¡û
>C171057743
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
4731472
4731545
+
Gln
CTG
-
¡û
>WENV181223693
OFDC01077606
[OFDC] hot springs metagenome; Water
391
464
+
Gln
CTG
[ENA]
¢þ
>WENV181415202
OGCL01005776
[OGCL] hot springs metagenome; Hot spring water
74
1
-
Gln
CTG
[ENA]
¢þ
>WENV181415430
OGCL01010891
[OGCL] hot springs metagenome; Hot spring water
4
77
+
Gln
CTG
[ENA]
¢þ
>WENV181415565
OGCL01014800
[OGCL] hot springs metagenome; Hot spring water
4
77
+
Gln
CTG
[ENA]
¢þ
>WENV183740883
PJUF01015397
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
306
233
-
Gln
CTG
[ENA]
¢þ
>WENV183746622
POYE01036740
[POYE] biofilm metagenome; steel pipe from biofilm reactor
76
149
+
Gln
CTG
[ENA]
¢þ
>WENV170011462
APMI01067021
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
447
520
+
Gln
CTG
[ENA]
¢þ
>WENV170680705
LFEF01012471
[LFEF] freshwater metagenome; waterbloom
5196
5123
-
Gln
CTG
[ENA]
¢þ
>WENV170711776
LNFM01007276
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6432
6359
-
Gln
CTG
[ENA]
¢þ
>WENV170713135
LNFM01024601
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1798
1871
+
Gln
CTG
[ENA]
¢þ
>WENV171003151
NNBT01001920
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
39748
39821
+
Gln
CTG
[ENA]
¢þ
>WENV171003752
NNBV01000600
[NNBV] plant metagenome; symbiotic tissue sample KVS11
284339
284266
-
Gln
CTG
[ENA]
¢þ
>C181063216
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
2573933
2573860
-
Gln
CTG
-
¡û
>C191014038
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
1850910
1850837
-
Gln
CTG
-
¡û
>W141805312
JPKG01000043
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
30407
30480
+
Gln
CTG
[ENA]
¡û
>W141815818
JQJJ01000012
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
341391
341318
-
Gln
CTG
[ENA]
¡û
>W1910501728
FYAS01000028
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
27643
27570
-
Gln
CTG
[ENA]
¡û
>W1910635388
LNCQ01000006
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
129960
130033
+
Gln
CTG
[ENA]
¡û
>W1910840142
MZXT01000016
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
313446
313373
-
Gln
CTG
[ENA]
¡û
>W1910840185
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
2429488
2429415
-
Gln
CTG
[ENA]
¡û
>W1910847642
NBDP01000005
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
154278
154205
-
Gln
CTG
[ENA]
¡û
>W1810252002
PQFZ01000003
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
497246
497173
-
Gln
CTG
[ENA]
¡û
>W1810463363
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
4476805
4476878
+
Gln
CTG
[ENA]
¡û
>W1810676911
QKMI01000012
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
43692
43765
+
Gln
CTG
[ENA]
¡û
>W1810783306
QQTO01000019
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
831377
831450
+
Gln
CTG
[ENA]
¡û
>W1810783334
QQTP01000001
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
831377
831450
+
Gln
CTG
[ENA]
¡û
>W1511353042
JROW01000921
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
2970
3043
+
Gln
CTG
[ENA]
¡û
>C161070666
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
669263
669336
+
Gln
CTG
[Ensembl]
¡û
>W1610550625
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
433184
433257
+
Gln
CTG
[ENA]
¡û
>W1610617185
LGSZ01000059
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
18256
18183
-
Gln
CTG
[ENA]
¡û
>W1610648990
LJHQ01000021
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
26737
26810
+
Gln
CTG
[ENA]
¡û
>W1610720391
LMAR01000076
Alphaproteobacteria
Bosea thiooxidans [LMAR]
11443
11516
+
Gln
CTG
[ENA]
¡û
>W1610731815
LMJT01000006
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
135286
135359
+
Gln
CTG
[ENA]
¡û
>W1610731873
LMJU01000015
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
255257
255184
-
Gln
CTG
[ENA]
¡û
>W1610731994
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
328312
328385
+
Gln
CTG
[ENA]
¡û
>W1610741871
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
588519
588592
+
Gln
CTG
[ENA]
¡û
>W1610753641
LNER01000559
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
800
727
-
Gln
CTG
[ENA]
¡û
>W1610912194
LSIB01000064
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
164567
164494
-
Gln
CTG
[ENA]
¡û
>W1610912457
LSIG01000229
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
34182
34255
+
Gln
CTG
[ENA]
¡û
>W1610912592
LSIK01000062
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
1678
1605
-
Gln
CTG
[ENA]
¡û
>W1610913116
LSIY01000090
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
36162
36235
+
Gln
CTG
[ENA]
¡û
>W1610913664
LSJL01000134
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
1674
1601
-
Gln
CTG
[ENA]
¡û
>W1610913822
LSJP01000312
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
36152
36225
+
Gln
CTG
[ENA]
¡û
>W1610913915
LSJR01000305
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
1678
1605
-
Gln
CTG
[ENA]
¡û
>W1610914019
LSJU01000378
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
629
702
+
Gln
CTG
[ENA]
¡û
>W1610914065
LSJV01000074
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
9129
9056
-
Gln
CTG
[ENA]
¡û
>W1610914148
LSJX01000066
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
35582
35655
+
Gln
CTG
[ENA]
¡û
>W1610914880
LSKN01000217
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
36172
36245
+
Gln
CTG
[ENA]
¡û
>W1710064188
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
4493449
4493522
+
Gln
CTG
[ENA]
¡û
>W1710515706
FNBZ01000006
Alphaproteobacteria
Bosea robiniae [FNBZ]
374270
374343
+
Gln
CTG
[ENA]
¡û
>W1710538972
FNUY01000015
Alphaproteobacteria
Bosea lathyri [FNUY]
2748
2675
-
Gln
CTG
[ENA]
¡û
>W1710544011
FOAN01000001
Alphaproteobacteria
Bosea lupini [FOAN]
752863
752790
-
Gln
CTG
[ENA]
¡û
>W1710556992
FOKP01000008
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
131012
130939
-
Gln
CTG
[ENA]
¡û
>W1710564939
FOQV01000016
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
14286
14359
+
Gln
CTG
[ENA]
¡û
>W1710596439
FTMO01000003
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
42959
42886
-
Gln
CTG
[ENA]
¡û
>W1710603279
FUYX01000003
Alphaproteobacteria
Bosea thiooxidans [FUYX]
42493
42420
-
Gln
CTG
[ENA]
¡û
>W1710660460
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
433184
433257
+
Gln
CTG
[ENA]
¡û
>W1710742799
LGSZ01000059
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
18256
18183
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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