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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780161 (55 seq.)
>W1710870163
LMKH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
167843
167916
+
Cys
GCA
[ENA]
¡û
>W1710870366
LMKL01000005
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
308606
308679
+
Cys
GCA
[ENA]
¡û
>W1710870473
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
1016551
1016478
-
Cys
GCA
[ENA]
¡û
>W1710870738
LMKT01000012
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
530005
529932
-
Cys
GCA
[ENA]
¡û
>W1710870894
LMKW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
284682
284609
-
Cys
GCA
[ENA]
¡û
>W1710870964
LMKX01000011
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
209276
209349
+
Cys
GCA
[ENA]
¡û
>W1710871030
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
1399956
1399883
-
Cys
GCA
[ENA]
¡û
>W1710871196
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
177680
177607
-
Cys
GCA
[ENA]
¡û
>W1710871218
LMLD01000010
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
214727
214800
+
Cys
GCA
[ENA]
¡û
>W1710872317
LMLW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
132212
132139
-
Cys
GCA
[ENA]
¡û
>W1710876734
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
2374397
2374324
-
Cys
GCA
[ENA]
¡û
>W1710877214
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
249080
249153
+
Cys
GCA
[ENA]
¡û
>W1710879468
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
1083091
1083018
-
Cys
GCA
[ENA]
¡û
>W1711603453
MOLY01000037
Alphaproteobacteria
Sphingomonas montana W16RD [MOLY]
74307
74234
-
Cys
GCA
[ENA]
¡û
>C171095052
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
1149321
1149394
+
Cys
GCA
-
¡û
>WENV180033526
FTKK01258153
[FTKK] metagenome; soil
324
397
+
Cys
GCA
[ENA]
¢þ
>C181108654
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
1055018
1054945
-
Cys
GCA
-
¡û
>C191095133
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
2558674
2558601
-
Cys
GCA
-
¡û
>C191154748
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
1974859
1974932
+
Cys
GCA
-
¡û
>C191163771
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
1810384
1810311
-
Cys
GCA
-
¡û
>W141801022
JPDP01000133
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
5309
5382
+
Cys
GCA
[ENA]
¡û
>W141805184
JPJC01000242
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
37665
37738
+
Cys
GCA
[ENA]
¡û
>SRA1002802
SRR002326.29522
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
45
118
+
Cys
GCA
[SRA]
>SRA1003113
SRR002326.207001
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
45
118
+
Cys
GCA
[SRA]
>W1810463392
PZZN01000001
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
78231
78304
+
Cys
GCA
[ENA]
¡û
>W1810475075
QAIS01000639
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
2008
2081
+
Cys
GCA
[ENA]
¡û
>W1810476710
QAOF01000003
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
329983
329910
-
Cys
GCA
[ENA]
¡û
>W1810476758
QAOG01000002
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
120601
120528
-
Cys
GCA
[ENA]
¡û
>W1810486877
QAYE01000001
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
970880
970807
-
Cys
GCA
[ENA]
¡û
>SRA1014294
SRR023845.77376
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
23
-
Cys
GCA
[SRA]
>SRA1014331
SRR023845.92155
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
93
20
-
Cys
GCA
[SRA]
>SRA1015126
SRR023845.469183
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
119
192
+
Cys
GCA
[SRA]
>SRA1015223
SRR023845.505925
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
191
118
-
Cys
GCA
[SRA]
>SRA1015299
SRR023846.6709
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
161
88
-
Cys
GCA
[SRA]
>SRA1015475
SRR023846.78135
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
14
87
+
Cys
GCA
[SRA]
>SRA1015561
SRR023846.112173
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
145
72
-
Cys
GCA
[SRA]
>W1511357052
JRVI01000040
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
7733
7806
+
Cys
GCA
[ENA]
¡û
>W1511390139
JSXI01000022
Alphaproteobacteria
Sphingomonas sp. ERG5 [JSXI]
33724
33651
-
Cys
GCA
[ENA]
¡û
>W121031777
AHHA01000036
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
6216
6289
+
Cys
GCA
[ENA]
¡û
>W121033294
AHIS01000098
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
7352
7425
+
Cys
GCA
[ENA]
¡û
>W121046816
AIDW01000019
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
193104
193177
+
Cys
GCA
[ENA]
¡û
>W1610732509
LMKH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
167843
167916
+
Cys
GCA
[ENA]
¡û
>W1610732712
LMKL01000005
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
308606
308679
+
Cys
GCA
[ENA]
¡û
>W1610732819
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
1016551
1016478
-
Cys
GCA
[ENA]
¡û
>W1610733084
LMKT01000012
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
530005
529932
-
Cys
GCA
[ENA]
¡û
>W1610733240
LMKW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
284682
284609
-
Cys
GCA
[ENA]
¡û
>W1610733310
LMKX01000011
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
209276
209349
+
Cys
GCA
[ENA]
¡û
>W1610733376
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
1399956
1399883
-
Cys
GCA
[ENA]
¡û
>W1610733542
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
177680
177607
-
Cys
GCA
[ENA]
¡û
>W1610733564
LMLD01000010
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
214727
214800
+
Cys
GCA
[ENA]
¡û
>W1610734663
LMLW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
132212
132139
-
Cys
GCA
[ENA]
¡û
>W1610739080
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
2374397
2374324
-
Cys
GCA
[ENA]
¡û
>W1610739560
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
249080
249153
+
Cys
GCA
[ENA]
¡û
>W1610741814
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
1083091
1083018
-
Cys
GCA
[ENA]
¡û
>W1710571527
FOVZ01000003
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
276621
276694
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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