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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780207 (40 seq.)
>W1710906971
LNOL01000001
Betaproteobacteria
Alcaligenes faecalis [LNOL]
276988
277061
+
Cys
GCA
[ENA]
¡û
>W131051759
AMXV01000014
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
60479
60552
+
Cys
GCA
[ENA]
¡û
>W1710995921
LQAS01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
157981
157908
-
Cys
GCA
[ENA]
¡û
>W131223057
AUBT01000005
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
96206
96279
+
Cys
GCA
[ENA]
¡û
>W1711710485
MSZN01000002
Betaproteobacteria
Alcaligenes faecalis [MSZN]
20058
19985
-
Cys
GCA
[ENA]
¡û
>W1711710553
MSZO01000006
Betaproteobacteria
Alcaligenes faecalis [MSZO]
170588
170661
+
Cys
GCA
[ENA]
¡û
>W1711710586
MSZP01000001
Betaproteobacteria
Alcaligenes faecalis [MSZP]
387722
387649
-
Cys
GCA
[ENA]
¡û
>W1711710632
MSZQ01000001
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
280893
280966
+
Cys
GCA
[ENA]
¡û
>W1711710687
MSZR01000002
Betaproteobacteria
Alcaligenes faecalis [MSZR]
175322
175249
-
Cys
GCA
[ENA]
¡û
>W1711711873
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
895695
895622
-
Cys
GCA
[ENA]
¡û
>C171115505
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
2182474
2182547
+
Cys
GCA
-
¡û
>W141104408
AVOG02000001
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
275999
275926
-
Cys
GCA
[ENA]
¡û
>W141237699
BBJQ01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
551365
551438
+
Cys
GCA
[ENA]
¡û
>WENV183741185
PJUF01052626
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
321
248
-
Cys
GCA
[ENA]
¢þ
>WENV170645983
JQGF01003217
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
549
622
+
Cys
GCA
[ENA]
¢þ
>WENV170646052
JQGF01015555
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
25
98
+
Cys
GCA
[ENA]
¢þ
>WENV170655350
JTFN01023630
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1639
1712
+
Cys
GCA
[ENA]
¢þ
>WENV170655419
JTFN01030640
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
524
451
-
Cys
GCA
[ENA]
¢þ
>WENV170655420
JTFN01030641
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1552
1625
+
Cys
GCA
[ENA]
¢þ
>WENV170655727
JTFN01063872
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
188
115
-
Cys
GCA
[ENA]
¢þ
>WENV170656268
JTFO01007483
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
5763
5690
-
Cys
GCA
[ENA]
¢þ
>WENV170656858
JTFO01052553
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
850
923
+
Cys
GCA
[ENA]
¢þ
>WENV170656859
JTFO01052554
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
188
115
-
Cys
GCA
[ENA]
¢þ
>WENV170657256
JTFO01112421
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
409
482
+
Cys
GCA
[ENA]
¢þ
>C181053224
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
2270522
2270595
+
Cys
GCA
-
¡û
>C181088582
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
1909744
1909817
+
Cys
GCA
-
¡û
>C191085261
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
2485831
2485904
+
Cys
GCA
-
¡û
>C191091133
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
838937
839010
+
Cys
GCA
-
¡û
>C191113949
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
3184410
3184483
+
Cys
GCA
-
¡û
>C191149619
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
141730
141803
+
Cys
GCA
-
¡û
>W1810583873
QEXO01000001
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
943534
943461
-
Cys
GCA
[ENA]
¡û
>W1511321035
JQCV01000005
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
219814
219887
+
Cys
GCA
[ENA]
¡û
>W1511537443
JZBR01000002
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
150230
150303
+
Cys
GCA
[ENA]
¡û
>C161051330
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
150230
150303
+
Cys
GCA
[Ensembl]
¡û
>W121091190
AKMR01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
334476
334403
-
Cys
GCA
[ENA]
¡û
>W1610093554
CYTB01000002
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
360742
360669
-
Cys
GCA
[ENA]
¡û
>W1610765985
LNOL01000001
Betaproteobacteria
Alcaligenes faecalis [LNOL]
276988
277061
+
Cys
GCA
[ENA]
¡û
>W1610850578
LQAS01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
157981
157908
-
Cys
GCA
[ENA]
¡û
>W1610921518
LSUO01000014
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
183851
183924
+
Cys
GCA
[ENA]
¡û
>W1710082509
BDHG01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
404578
404505
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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