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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780210 (52 seq.)
>W1710906987
LNOL01000022
Betaproteobacteria
Alcaligenes faecalis [LNOL]
10092
10165
+
Gly
TCC
[ENA]
¡û
>W131051784
AMXV01000049
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
10336
10409
+
Gly
TCC
[ENA]
¡û
>W1710995936
LQAS01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
303074
303147
+
Gly
TCC
[ENA]
¡û
>W131223078
AUBT01000022
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
906
833
-
Gly
TCC
[ENA]
¡û
>W1711710525
MSZN01000038
Betaproteobacteria
Alcaligenes faecalis [MSZN]
10242
10315
+
Gly
TCC
[ENA]
¡û
>W1711710575
MSZO01000025
Betaproteobacteria
Alcaligenes faecalis [MSZO]
63850
63923
+
Gly
TCC
[ENA]
¡û
>W1711710614
MSZP01000006
Betaproteobacteria
Alcaligenes faecalis [MSZP]
64613
64540
-
Gly
TCC
[ENA]
¡û
>W1711710676
MSZQ01000022
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
64634
64561
-
Gly
TCC
[ENA]
¡û
>W1711710726
MSZR01000022
Betaproteobacteria
Alcaligenes faecalis [MSZR]
10136
10209
+
Gly
TCC
[ENA]
¡û
>W1711711910
MTBI01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
838
765
-
Gly
TCC
[ENA]
¡û
>C171115518
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
3999649
3999576
-
Gly
TCC
-
¡û
>WENV180311398
OBJT01271126
[OBJT] soil metagenome; soil
131
204
+
Gly
TCC
[ENA]
¢þ
>W141104428
AVOG02000034
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
301112
301185
+
Gly
TCC
[ENA]
¡û
>WENV181838288
OGVM01033075
[OGVM] freshwater metagenome; freshwater
300
373
+
Gly
TCC
[ENA]
¢þ
>WENV181843392
OGVU01011929
[OGVU] freshwater metagenome; freshwater
108
35
-
Gly
TCC
[ENA]
¢þ
>W141237729
BBJQ01000005
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
348369
348442
+
Gly
TCC
[ENA]
¡û
>WENV183733633
PJTY01008107
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1024
1097
+
Gly
TCC
[ENA]
¢þ
>WENV183741099
PJUF01040850
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
468
541
+
Gly
TCC
[ENA]
¢þ
>WENV170645946
JQGF01001469
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
9947
10020
+
Gly
TCC
[ENA]
¢þ
>WENV170651925
JRYG01015244
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
255
182
-
Gly
TCC
[ENA]
¢þ
>WENV170653636
JRYJ01021337
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
127
54
-
Gly
TCC
[ENA]
¢þ
>WENV170655554
JTFN01044465
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
88
15
-
Gly
TCC
[ENA]
¢þ
>WENV170655656
JTFN01055330
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
15
88
+
Gly
TCC
[ENA]
¢þ
>WENV170655852
JTFN01084994
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
200
127
-
Gly
TCC
[ENA]
¢þ
>WENV170656519
JTFO01021013
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
196
123
-
Gly
TCC
[ENA]
¢þ
>WENV170656522
JTFO01021014
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
75
2
-
Gly
TCC
[ENA]
¢þ
>WENV170657094
JTFO01083073
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
75
2
-
Gly
TCC
[ENA]
¢þ
>WENV170657174
JTFO01096247
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
76
3
-
Gly
TCC
[ENA]
¢þ
>WENV170657279
JTFO01116665
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
76
3
-
Gly
TCC
[ENA]
¢þ
>WENV170657305
JTFO01121566
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
190
117
-
Gly
TCC
[ENA]
¢þ
>WENV170657332
JTFO01126868
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
15
88
+
Gly
TCC
[ENA]
¢þ
>WENV170657484
JTFO01166009
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
76
3
-
Gly
TCC
[ENA]
¢þ
>WENV170657488
JTFO01167996
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
16
89
+
Gly
TCC
[ENA]
¢þ
>WENV170657499
JTFO01170458
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
15
88
+
Gly
TCC
[ENA]
¢þ
>WENV170657621
JTFP01005317
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
694
621
-
Gly
TCC
[ENA]
¢þ
>WENV170684616
LFRM01049122
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
86
159
+
Gly
TCC
[ENA]
¢þ
>C181053237
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
4030479
4030406
-
Gly
TCC
-
¡û
>C181088595
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
3743393
3743320
-
Gly
TCC
-
¡û
>C191085274
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
4285085
4285012
-
Gly
TCC
-
¡û
>C191091175
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
2480989
2480916
-
Gly
TCC
-
¡û
>C191113980
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
943992
943919
-
Gly
TCC
-
¡û
>C191149661
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
1840051
1839978
-
Gly
TCC
-
¡û
>W1810583915
QEXO01000005
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
69155
69082
-
Gly
TCC
[ENA]
¡û
>W1511321010
JQCV01000002
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
496151
496224
+
Gly
TCC
[ENA]
¡û
>W1511537459
JZBR01000003
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
43007
42934
-
Gly
TCC
[ENA]
¡û
>C161051353
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
2420894
2420967
+
Gly
TCC
[Ensembl]
¡û
>W121091194
AKMR01000002
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
199820
199893
+
Gly
TCC
[ENA]
¡û
>W1610093565
CYTB01000004
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
348324
348397
+
Gly
TCC
[ENA]
¡û
>W1610766001
LNOL01000022
Betaproteobacteria
Alcaligenes faecalis [LNOL]
10092
10165
+
Gly
TCC
[ENA]
¡û
>W1610850593
LQAS01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
303074
303147
+
Gly
TCC
[ENA]
¡û
>W1610921515
LSUO01000011
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
242
169
-
Gly
TCC
[ENA]
¡û
>W1710082532
BDHG01000003
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
348496
348569
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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