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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780242 (83 seq.)
>W1710943854
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
644963
644890
-
Cys
GCA
[ENA]
¡û
>W131045173
AMRG01000002
Gammaproteobacteria
Idiomarina xiamenensis 10-D-4 [AMRG]
261608
261535
-
Cys
GCA
[ENA]
¡û
>W1711029719
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
644963
644890
-
Cys
GCA
[ENA]
¡û
>W1711065246
LSBQ01000004
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
176256
176329
+
Cys
GCA
[ENA]
¡û
>W1711126102
LUNZ01000026
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
9334
9407
+
Cys
GCA
[ENA]
¡û
>W1711126134
LUOA01000019
Gammaproteobacteria
Idiomarina sp. REDSEA-S27_B4 [LUOA]
20364
20291
-
Cys
GCA
[ENA]
¡û
>W1711356908
MDGT01000003
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
1250210
1250283
+
Cys
GCA
[ENA]
¡û
>W131239240
BANL01000021
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
382898
382971
+
Cys
GCA
[ENA]
¡û
>C011060
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
709292
709219
-
Cys
GCA
[Ensembl]
¡û
>w012941
AAMX01000012
Gammaproteobacteria
Idiomarina baltica OS145 [AAMX]
62131
62061
-
Cys
GCA
[ENA]
¡û
>WENV180345980
OBLN01016814
[OBLN] sediment metagenome; sediment
647
720
+
Cys
GCA
[ENA]
¢þ
>WENV181233527
OFET01000002
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
649973
649900
-
Cys
GCA
[ENA]
¢þ
>WENV181234184
OFEU01000002
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
649973
649900
-
Cys
GCA
[ENA]
¢þ
>WENV170015976
AZIJ01006029
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
12102
12175
+
Cys
GCA
[ENA]
¢þ
>WENV170112432
CEGE01009278
[CEGE] microbial mat metagenome; grass silage
191
118
-
Cys
GCA
[ENA]
¢þ
>WENV170112694
CEGF01015424
[CEGF] microbial mat metagenome; grass silage
122
49
-
Cys
GCA
[ENA]
¢þ
>WENV170136424
CENV01032199
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3113
3040
-
Cys
GCA
[ENA]
¢þ
>WENV170234277
CEQK01033086
[CEQK] marine metagenome genome assembly TARA_076_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
52
125
+
Cys
GCA
[ENA]
¢þ
>WENV170283572
CERU01036731
[CERU] marine metagenome genome assembly TARA_065_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
22601
22674
+
Cys
GCA
[ENA]
¢þ
>WENV170307790
CESK01008054
[CESK] marine metagenome genome assembly TARA_078_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
29970
29897
-
Cys
GCA
[ENA]
¢þ
>WENV170655207
JTFN01011456
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2259
2332
+
Cys
GCA
[ENA]
¢þ
>WENV170656120
JTFO01000378
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
42414
42341
-
Cys
GCA
[ENA]
¢þ
>WENV170739926
LULR01000014
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
20364
20291
-
Cys
GCA
[ENA]
¢þ
>WENV170744253
LULX01000043
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
9334
9407
+
Cys
GCA
[ENA]
¢þ
>C181059205
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
1364673
1364600
-
Cys
GCA
-
¡û
>C181110257
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
2508232
2508159
-
Cys
GCA
-
¡û
>C181146699
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
1208170
1208243
+
Cys
GCA
-
¡û
>W141802148
JPER01000001
Gammaproteobacteria
Pseudidiomarina salinarum [JPER]
859921
859848
-
Cys
GCA
[ENA]
¡û
>W141804752
JPIN01000001
Gammaproteobacteria
Pseudidiomarina atlantica MCCC 1A10513 [JPIN]
258950
258877
-
Cys
GCA
[ENA]
¡û
>W1911584676
PIPI01000001
Gammaproteobacteria
Aliidiomarina haloalkalitolerans AK5 [PIPI]
403200
403273
+
Cys
GCA
[ENA]
¡û
>W1911584725
PIPJ01000002
Gammaproteobacteria
Aliidiomarina iranensis GBPy7 [PIPJ]
285006
284933
-
Cys
GCA
[ENA]
¡û
>W1911584806
PIPK01000008
Gammaproteobacteria
Aliidiomarina maris CF12-14 [PIPK]
135828
135901
+
Cys
GCA
[ENA]
¡û
>W1911584854
PIPL01000001
Gammaproteobacteria
Aliidiomarina minuta MLST1 [PIPL]
798090
798017
-
Cys
GCA
[ENA]
¡û
>W1911584873
PIPM01000001
Gammaproteobacteria
Aliidiomarina sanyensis GYP-17 [PIPM]
260151
260078
-
Cys
GCA
[ENA]
¡û
>W1911584920
PIPN01000001
Gammaproteobacteria
Aliidiomarina sedimenti GBSy1 [PIPN]
152578
152651
+
Cys
GCA
[ENA]
¡û
>W1911585005
PIPO01000003
Gammaproteobacteria
Aliidiomarina soli Y4G10-17 [PIPO]
480330
480403
+
Cys
GCA
[ENA]
¡û
>W1911585029
PIPP01000001
Gammaproteobacteria
Aliidiomarina shirensis AIS [PIPP]
281540
281613
+
Cys
GCA
[ENA]
¡û
>W1911585087
PIPQ01000001
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
583728
583801
+
Cys
GCA
[ENA]
¡û
>W1911585199
PIPS01000001
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
85111
85038
-
Cys
GCA
[ENA]
¡û
>W1911585294
PIPU01000001
Gammaproteobacteria
Pseudidiomarina donghaiensis 908033 [PIPU]
1111874
1111801
-
Cys
GCA
[ENA]
¡û
>W1911585330
PIPV01000001
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
518593
518666
+
Cys
GCA
[ENA]
¡û
>W1911585493
PIPY01000007
Gammaproteobacteria
Pseudidiomarina insulisalsae CVS-6 [PIPY]
95667
95740
+
Cys
GCA
[ENA]
¡û
>W1911585527
PIPZ01000001
Gammaproteobacteria
Pseudidiomarina marina PIM1 [PIPZ]
536304
536377
+
Cys
GCA
[ENA]
¡û
>W1911585575
PIQA01000001
Gammaproteobacteria
Idiomarina piscisalsi TPS4-2 [PIQA]
328669
328742
+
Cys
GCA
[ENA]
¡û
>W1911585674
PIQC01000001
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
89796
89869
+
Cys
GCA
[ENA]
¡û
>W1911585725
PIQD01000001
Gammaproteobacteria
Pseudidiomarina salinarum ISL-52 [PIQD]
509970
510043
+
Cys
GCA
[ENA]
¡û
>W1911585828
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
643620
643693
+
Cys
GCA
[ENA]
¡û
>W1911585875
PIQG01000001
Gammaproteobacteria
Pseudidiomarina taiwanensis PIT1 [PIQG]
450169
450242
+
Cys
GCA
[ENA]
¡û
>W1911585918
PIQH01000001
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
83053
83126
+
Cys
GCA
[ENA]
¡û
>W1911585994
PIQJ01000001
Gammaproteobacteria
Pseudidiomarina tainanensis PIN1 [PIQJ]
1231817
1231744
-
Cys
GCA
[ENA]
¡û
>W1810609095
QGTT01000002
Gammaproteobacteria
Pseudidiomarina maritima 125B1 [QGTT]
111074
111147
+
Cys
GCA
[ENA]
¡û
>W1810609584
QGUA01000003
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
27142
27215
+
Cys
GCA
[ENA]
¡û
>W1810671371
QJST01000001
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
518728
518801
+
Cys
GCA
[ENA]
¡û
>W1810694618
QLMD01000008
Gammaproteobacteria
Aliidiomarina maris CGMCC 1.15366 [QLMD]
4315
4242
-
Cys
GCA
[ENA]
¡û
>W1810706714
QMKJ01000001
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
414550
414623
+
Cys
GCA
[ENA]
¡û
>W1810721855
QNSG01000004
Gammaproteobacteria
Pseudidiomarina tainanensis 125Bg [QNSG]
111074
111147
+
Cys
GCA
[ENA]
¡û
>W1810758904
QPJA01000002
Gammaproteobacteria
Pseudidiomarina tainanensis 86_o [QPJA]
111073
111146
+
Cys
GCA
[ENA]
¡û
>W1810785233
QRBK01000001
Gammaproteobacteria
Idiomarina abyssalis 017G.2 [QRBK]
512025
511952
-
Cys
GCA
[ENA]
¡û
>W1510741056
CYHB01000001
Gammaproteobacteria
Pseudidiomarina woesei DSM 27808 [CYHB]
178846
178919
+
Cys
GCA
[ENA]
¡û
>W1511533790
JYNI01000072
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
1085
1158
+
Cys
GCA
[ENA]
¡û
>W1511533832
JYNJ01000127
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
272
345
+
Cys
GCA
[ENA]
¡û
>W1511533861
JYNJ01000239
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
5368
5441
+
Cys
GCA
[ENA]
¡û
>W11170578
AFPO01000011
Gammaproteobacteria
Idiomarina sp. A28L [AFPO]
210707
210780
+
Cys
GCA
[ENA]
¡û
>C161107806
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
2123311
2123238
-
Cys
GCA
-
¡û
>C131016308
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
709407
709334
-
Cys
GCA
[Ensembl]
¡û
>W1610616476
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
630180
630107
-
Cys
GCA
[ENA]
¡û
>W1610621749
LHSG01000005
Gammaproteobacteria
Idiomarina zobellii [LHSG]
114629
114702
+
Cys
GCA
[ENA]
¡û
>W1610629353
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
649881
649808
-
Cys
GCA
[ENA]
¡û
>W1610632449
LIPW01000001
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
178846
178919
+
Cys
GCA
[ENA]
¡û
>W1610800154
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
644963
644890
-
Cys
GCA
[ENA]
¡û
>W1610877987
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
644963
644890
-
Cys
GCA
[ENA]
¡û
>W1610906035
LSBQ01000004
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
176256
176329
+
Cys
GCA
[ENA]
¡û
>W1610937035
LUNZ01000026
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
9334
9407
+
Cys
GCA
[ENA]
¡û
>W1610937067
LUOA01000019
Gammaproteobacteria
Idiomarina sp. REDSEA-S27_B4 [LUOA]
20364
20291
-
Cys
GCA
[ENA]
¡û
>W1710509850
FMXN01000001
Gammaproteobacteria
Pseudidiomarina indica [FMXN]
144972
145045
+
Cys
GCA
[ENA]
¡û
>W1710515755
FNCB01000004
Gammaproteobacteria
Idiomarina zobellii [FNCB]
114847
114920
+
Cys
GCA
[ENA]
¡û
>W1710574994
FOYU01000001
Gammaproteobacteria
Pseudidiomarina maritima [FOYU]
515201
515274
+
Cys
GCA
[ENA]
¡û
>W1710577943
FPBE01000001
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
630871
630798
-
Cys
GCA
[ENA]
¡û
>W1710579259
FPCF01000001
Gammaproteobacteria
Pseudidiomarina donghaiensis [FPCF]
1110999
1110926
-
Cys
GCA
[ENA]
¡û
>W1710741611
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
630180
630107
-
Cys
GCA
[ENA]
¡û
>W1710752622
LHSG01000005
Gammaproteobacteria
Idiomarina zobellii [LHSG]
114629
114702
+
Cys
GCA
[ENA]
¡û
>W1710760492
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
649881
649808
-
Cys
GCA
[ENA]
¡û
>W1710766835
LIPW01000001
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
178846
178919
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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