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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780283 (120 seq.)
>W1710785412
LJHV01000008
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
208674
208747
+
Gly
TCC
[ENA]
¡û
>W1710785585
LJHZ01000046
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
18525
18452
-
Gly
TCC
[ENA]
¡û
>W1710856884
LLZS01000003
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
640923
640850
-
Gly
TCC
[ENA]
¡û
>W1710869706
LMJY01000001
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
245695
245768
+
Gly
TCC
[ENA]
¡û
>W1710892822
LNED01000038
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
152169
152096
-
Gly
TCC
[ENA]
¡û
>W131058778
ANFX01000019
Alphaproteobacteria
Porphyrobacter sp. AAP82 [ANFX]
73667
73594
-
Gly
TCC
[ENA]
¡û
>W131058813
ANFY01000003
Alphaproteobacteria
Sandarakinorhabdus sp. AAP62 [ANFY]
229551
229478
-
Gly
TCC
[ENA]
¡û
>W1711051697
LRSE01000005
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
36481
36554
+
Gly
TCC
[ENA]
¡û
>W1711072903
LSIA01000159
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
12702
12775
+
Gly
TCC
[ENA]
¡û
>W1711073700
LSIV01000095
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
98028
98101
+
Gly
TCC
[ENA]
¡û
>W1711073913
LSJB01000029
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
10785
10858
+
Gly
TCC
[ENA]
¡û
>W1711074264
LSJJ01000074
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
19816
19889
+
Gly
TCC
[ENA]
¡û
>W1711074329
LSJK01000252
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
19816
19889
+
Gly
TCC
[ENA]
¡û
>W1711074548
LSJQ01000244
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
17339
17412
+
Gly
TCC
[ENA]
¡û
>W1711074655
LSJS01000222
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
19816
19889
+
Gly
TCC
[ENA]
¡û
>W1711074933
LSJZ01000067
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
19816
19889
+
Gly
TCC
[ENA]
¡û
>W1711075226
LSKF01000107
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
12870
12943
+
Gly
TCC
[ENA]
¡û
>W1711075514
LSKM01000015
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
32640
32567
-
Gly
TCC
[ENA]
¡û
>W1711075685
LSKQ01000003
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
13273
13200
-
Gly
TCC
[ENA]
¡û
>W1711220332
LXQI01000024
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
8838
8765
-
Gly
TCC
[ENA]
¡û
>W131216103
ATVO01000004
Alphaproteobacteria
Sandarakinorhabdus limnophila DSM 17366 [ATVO]
147576
147649
+
Gly
TCC
[ENA]
¡û
>W1711284869
LZRP01000002
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
252157
252084
-
Gly
TCC
[ENA]
¡û
>W1711292840
LZYB01000004
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
19788
19861
+
Gly
TCC
[ENA]
¡û
>W1711705047
MSQB01000024
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
58642
58715
+
Gly
TCC
[ENA]
¡û
>W1711766279
MUYG01000007
Alphaproteobacteria
Erythrobacter donghaensis [MUYG]
330892
330965
+
Gly
TCC
[ENA]
¡û
>W1711766350
MUYH01000010
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
64023
64096
+
Gly
TCC
[ENA]
¡û
>W1711766394
MUYI01000001
Alphaproteobacteria
Erythrobacter dokdonensis [MUYI]
874782
874709
-
Gly
TCC
[ENA]
¡û
>W1711766433
MUYJ01000008
Alphaproteobacteria
Erythrobacter tepidarius [MUYJ]
81162
81235
+
Gly
TCC
[ENA]
¡û
>W1711766478
MUYK01000005
Alphaproteobacteria
Erythrobacter colymbi [MUYK]
228345
228418
+
Gly
TCC
[ENA]
¡û
>W1712049870
NFUS01000001
Alphaproteobacteria
Sphingomonas sp. IBVSS1 [NFUS]
60331
60404
+
Gly
TCC
[ENA]
¡û
>C171056580
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
3208217
3208290
+
Gly
TCC
-
¡û
>C171057318
CP017113
Alphaproteobacteria
Porphyrobacter sp. LM 6 [CP017113]
223290
223363
+
Gly
TCC
-
¡û
>WENV180019081
FTBG01000549
[FTBG] metagenome; soil
10698
10769
+
Gly
TCC
[ENA]
¢þ
>WENV180694686
OCZS012561044
[OCZS] soil metagenome; soil
154
81
-
Gly
TCC
[ENA]
¢þ
>W141077977
ATHL01000149
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
55817
55890
+
Gly
TCC
[ENA]
¡û
>WENV181223005
OFDC01001066
[OFDC] hot springs metagenome; Water
8698
8625
-
Gly
TCC
[ENA]
¢þ
>WENV181223070
OFDC01001682
[OFDC] hot springs metagenome; Water
2719
2792
+
Gly
TCC
[ENA]
¢þ
>WENV181223660
OFDC01062248
[OFDC] hot springs metagenome; Water
8
81
+
Gly
TCC
[ENA]
¢þ
>WENV181226928
OFDN01000451
[OFDN] hot springs metagenome; Water
1459
1532
+
Gly
TCC
[ENA]
¢þ
>WENV181234685
OFEU01001459
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
386
313
-
Gly
TCC
[ENA]
¢þ
>W141230405
BASZ01000013
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
8148
8075
-
Gly
TCC
[ENA]
¡û
>WENV183726826
PJTO01000215
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
44153
44226
+
Gly
TCC
[ENA]
¢þ
>WENV183727890
PJTP01003422
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
74
1
-
Gly
TCC
[ENA]
¢þ
>WENV183727931
PJTP01007146
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
345
272
-
Gly
TCC
[ENA]
¢þ
>WENV183730507
PJTS01000079
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
53488
53561
+
Gly
TCC
[ENA]
¢þ
>WENV183731490
PJTT01000008
[PJTT] soil metagenome; Soil (2) enriched on wood chips
39414
39341
-
Gly
TCC
[ENA]
¢þ
>WENV183731785
PJTT01000178
[PJTT] soil metagenome; Soil (2) enriched on wood chips
53488
53561
+
Gly
TCC
[ENA]
¢þ
>WENV183733012
PJTY01000018
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
235609
235682
+
Gly
TCC
[ENA]
¢þ
>WENV183733199
PJTY01000239
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
3243
3170
-
Gly
TCC
[ENA]
¢þ
>WENV183734021
PJTZ01000020
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
235609
235682
+
Gly
TCC
[ENA]
¢þ
>WENV183738296
PJUD01152784
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
91
18
-
Gly
TCC
[ENA]
¢þ
>WENV183738676
PJUE01000086
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
35741
35668
-
Gly
TCC
[ENA]
¢þ
>WENV183739143
PJUE01002264
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
2111
2038
-
Gly
TCC
[ENA]
¢þ
>WENV183748052
PPFU01008791
[PPFU] hypolithon metagenome; Antarctic Hypolithon
8840
8767
-
Gly
TCC
[ENA]
¢þ
>WENV183749348
PPFU01154066
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1338
1411
+
Gly
TCC
[ENA]
¢þ
>WENV170121243
CENL01080422
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
395
322
-
Gly
TCC
[ENA]
¢þ
>WENV170136364
CENV01026698
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
11360
11287
-
Gly
TCC
[ENA]
¢þ
>WENV170709128
LNFM01000127
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
137730
137657
-
Gly
TCC
[ENA]
¢þ
>WENV171003034
NKIC01007426
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
39
112
+
Gly
TCC
[ENA]
¢þ
>PL191000686
CP028348
Alphaproteobacteria
Novosphingobium sp. THN1 plasmid:pTHN (CP028348)
742313
742240
-
Gly
TCC
[ENA]
¡û
>W141484960
JFYZ01000029
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
564
491
-
Gly
TCC
[ENA]
¡û
>C181069553
CP022600
Alphaproteobacteria
Porphyrobacter sp. HT-58-2 [CP022600]
184367
184440
+
Gly
TCC
-
¡û
>C181192058
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
3399110
3399037
-
Gly
TCC
-
¡û
>C191002606
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
537021
536948
-
Gly
TCC
-
¡û
>C191121075
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
4220735
4220808
+
Gly
TCC
-
¡û
>C191188816
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
866063
866136
+
Gly
TCC
-
¡û
>W141820299
JQMU01000001
Alphaproteobacteria
Porphyrobacter sp. HL-46 [JQMU]
1518780
1518853
+
Gly
TCC
[ENA]
¡û
>W1910231970
FPEH01000024
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
32389
32316
-
Gly
TCC
[ENA]
¡û
>W1910651514
LYMM01000040
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
178929
178856
-
Gly
TCC
[ENA]
¡û
>W1911139277
NOXT01000120
Alphaproteobacteria
Sandarakinorhabdus cyanobacteriorum TH057 [NOXT]
100681
100754
+
Gly
TCC
[ENA]
¡û
>W1911768025
QXFM01000133
Alphaproteobacteria
Aurantiacibacter xanthus CCTCC AB 2015396 [QXFM]
27567
27640
+
Gly
TCC
[ENA]
¡û
>W1911823500
QZVQ01000003
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
435420
435493
+
Gly
TCC
[ENA]
¡û
>W1810121242
PHUF01000005
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
197453
197526
+
Gly
TCC
[ENA]
¡û
>W1810195475
PKRO01000034
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
2934
2861
-
Gly
TCC
[ENA]
¡û
>W1810658661
QJJM01000001
Alphaproteobacteria
Blastomonas natatoria DSM 3183 [QJJM]
415406
415479
+
Gly
TCC
[ENA]
¡û
>W1810676609
QKMD01000002
Alphaproteobacteria
Novosphingobium sp. GV010 [QKMD]
380899
380826
-
Gly
TCC
[ENA]
¡û
>W1510757033
JACU01000005
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
725714
725641
-
Gly
TCC
[ENA]
¡û
>W1511357019
JRVC01000014
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
171685
171758
+
Gly
TCC
[ENA]
¡û
>W1511398375
JTDN01000002
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
362248
362175
-
Gly
TCC
[ENA]
¡û
>W1511519435
JXZE01000022
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
295
222
-
Gly
TCC
[ENA]
¡û
>W1511590527
LBHB01000002
Alphaproteobacteria
Aurantiacibacter luteus KA37 [LBHB]
572830
572903
+
Gly
TCC
[ENA]
¡û
>W1511591716
LBHU01000001
Alphaproteobacteria
Aurantiacibacter marinus HWDM-33 [LBHU]
998377
998450
+
Gly
TCC
[ENA]
¡û
>W1511629874
LDCP01000001
Alphaproteobacteria
Aurantiacibacter marinus KCTC 23554 [LDCP]
339720
339647
-
Gly
TCC
[ENA]
¡û
>WENV056491
AACY023258175
Marine microbial communities from Global Ocean Sampling (GOS)
773
848
+
Gly
TCC
[ENA]
>C161093663
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
686364
686437
+
Gly
TCC
[Ensembl]
¡û
>W121081089
AKFJ01000101
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
85186
85259
+
Gly
TCC
[ENA]
¡û
>W121086715
AKKE01000057
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
31542
31615
+
Gly
TCC
[ENA]
¡û
>W121119213
ALVC01000041
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
2456
2529
+
Gly
TCC
[ENA]
¡û
>W1610071257
BCTX01000102
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
1730
1803
+
Gly
TCC
[ENA]
¡û
>W1610077000
BCZE01000030
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
81088
81015
-
Gly
TCC
[ENA]
¡û
>W1610077050
BCZF01000026
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
4058
3985
-
Gly
TCC
[ENA]
¡û
>W1610614846
LGJH01000166
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
204693
204766
+
Gly
TCC
[ENA]
¡û
>W1610649218
LJHV01000008
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
208674
208747
+
Gly
TCC
[ENA]
¡û
>W1610649391
LJHZ01000046
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
18525
18452
-
Gly
TCC
[ENA]
¡û
>W1610719265
LLZS01000003
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
640923
640850
-
Gly
TCC
[ENA]
¡û
>W1610732052
LMJY01000001
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
245695
245768
+
Gly
TCC
[ENA]
¡û
>W1610753088
LNED01000038
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
152169
152096
-
Gly
TCC
[ENA]
¡û
>W1610892826
LRSE01000005
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
36481
36554
+
Gly
TCC
[ENA]
¡û
>W1610912163
LSIA01000159
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
12702
12775
+
Gly
TCC
[ENA]
¡û
>W1610913005
LSIV01000095
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
98028
98101
+
Gly
TCC
[ENA]
¡û
>W1610913218
LSJB01000029
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
10785
10858
+
Gly
TCC
[ENA]
¡û
>W1610913569
LSJJ01000074
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
19816
19889
+
Gly
TCC
[ENA]
¡û
>W1610913634
LSJK01000252
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
19816
19889
+
Gly
TCC
[ENA]
¡û
>W1610913853
LSJQ01000244
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
17339
17412
+
Gly
TCC
[ENA]
¡û
>W1610913960
LSJS01000222
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
19816
19889
+
Gly
TCC
[ENA]
¡û
>W1610914238
LSJZ01000067
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
19816
19889
+
Gly
TCC
[ENA]
¡û
>W1610914531
LSKF01000107
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
12870
12943
+
Gly
TCC
[ENA]
¡û
>W1610914819
LSKM01000015
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
32640
32567
-
Gly
TCC
[ENA]
¡û
>W1610914990
LSKQ01000003
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
13273
13200
-
Gly
TCC
[ENA]
¡û
>W1611004804
LXQI01000024
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
8838
8765
-
Gly
TCC
[ENA]
¡û
>W1611004955
LXQM01000002
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
363478
363405
-
Gly
TCC
[ENA]
¡û
>W1611042654
LZRP01000002
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
252157
252084
-
Gly
TCC
[ENA]
¡û
>W1611050056
LZYB01000004
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
19788
19861
+
Gly
TCC
[ENA]
¡û
>W1710068622
BCTX01000102
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
1730
1803
+
Gly
TCC
[ENA]
¡û
>W1710074689
BCZE01000030
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
81088
81015
-
Gly
TCC
[ENA]
¡û
>W1710074739
BCZF01000026
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
4058
3985
-
Gly
TCC
[ENA]
¡û
>W1710562058
FOOR01000002
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
238114
238041
-
Gly
TCC
[ENA]
¡û
>W1710593229
FRDF01000015
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
32304
32377
+
Gly
TCC
[ENA]
¡û
>W1710605980
FWXL01000004
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
68054
68127
+
Gly
TCC
[ENA]
¡û
>W1710736092
LGJH01000166
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
204693
204766
+
Gly
TCC
[ENA]
¡û
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