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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780299 (124 seq.)
>W1710864879
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
938109
938182
+
Gly
TCC
[ENA]
¡û
>W1710864998
LMGI01000001
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
513135
513062
-
Gly
TCC
[ENA]
¡û
>W1710867402
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
706841
706914
+
Gly
TCC
[ENA]
¡û
>W1710912502
LNRR01000001
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
475217
475290
+
Gly
TCC
[ENA]
¡û
>W1710912550
LNRS01000001
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
275517
275444
-
Gly
TCC
[ENA]
¡û
>W1710912596
LNRT01000001
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
275517
275444
-
Gly
TCC
[ENA]
¡û
>W1710912639
LNRU01000001
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
475301
475374
+
Gly
TCC
[ENA]
¡û
>W1710912682
LNRV01000003
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
173028
173101
+
Gly
TCC
[ENA]
¡û
>W1710912759
LNRW01000019
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
71654
71581
-
Gly
TCC
[ENA]
¡û
>W1710912783
LNRX01000004
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
222339
222266
-
Gly
TCC
[ENA]
¡û
>W1710912842
LNRY01000012
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
71069
71142
+
Gly
TCC
[ENA]
¡û
>W1710912881
LNRZ01000004
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
214506
214433
-
Gly
TCC
[ENA]
¡û
>W1710912912
LNSA01000001
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
152411
152338
-
Gly
TCC
[ENA]
¡û
>W1710912975
LNSB01000030
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
6106
6179
+
Gly
TCC
[ENA]
¡û
>W1710913039
LNSC01000109
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
3858
3785
-
Gly
TCC
[ENA]
¡û
>W1710913051
LNSD01000003
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1710913106
LNSE01000005
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1710913149
LNSF01000004
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1710913194
LNSG01000004
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1710913232
LNSH01000004
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1710913281
LNSI01000004
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1710913318
LNSJ01000002
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1710913375
LNSK01000002
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
409960
409887
-
Gly
TCC
[ENA]
¡û
>W131100414
AOUN01000005
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
9820
9893
+
Gly
TCC
[ENA]
¡û
>W1711127834
LURA01000002
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
114930
115003
+
Gly
TCC
[ENA]
¡û
>W1711127878
LURB01000017
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
58052
57979
-
Gly
TCC
[ENA]
¡û
>W1711127922
LURC01000380
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
1452
1525
+
Gly
TCC
[ENA]
¡û
>W1711127966
LURE01000036
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
2582
2655
+
Gly
TCC
[ENA]
¡û
>W1711127977
LURF01000213
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
764
837
+
Gly
TCC
[ENA]
¡û
>W1711128001
LURG01000155
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
1456
1383
-
Gly
TCC
[ENA]
¡û
>W1711128023
LURH01000007
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
55206
55279
+
Gly
TCC
[ENA]
¡û
>W1711128061
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
1181415
1181488
+
Gly
TCC
[ENA]
¡û
>W1711259771
LYVN01000021
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
6073
6146
+
Gly
TCC
[ENA]
¡û
>W1711386393
MEFH01000015
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
58938
59011
+
Gly
TCC
[ENA]
¡û
>W1711386432
MEFH01000214
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
4760
4833
+
Gly
TCC
[ENA]
¡û
>W1711503950
MKUC01000020
Alphaproteobacteria
Sphingopyxis sp. 65-8 [MKUC]
343
416
+
Gly
TCC
[ENA]
¡û
>W1712105796
NISJ01000016
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
41766
41839
+
Gly
TCC
[ENA]
¡û
>W1712105821
NISK01000002
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
62162
62089
-
Gly
TCC
[ENA]
¡û
>C171094550
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
634762
634835
+
Gly
TCC
-
¡û
>C019718
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
765277
765350
+
Gly
TCC
[Ensembl]
¡û
>WENV181167035
OEIU01006847
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1117
1044
-
Gly
TCC
[ENA]
¢þ
>WENV181308267
OFIS01001735
[OFIS] sludge metagenome; sludge
293
220
-
Gly
TCC
[ENA]
¢þ
>WENV181402226
OFTY01000267
[OFTY] sludge metagenome; sludge
33527
33454
-
Gly
TCC
[ENA]
¢þ
>WENV183729560
PJTQ01068603
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
129
56
-
Gly
TCC
[ENA]
¢þ
>WENV170727403
LULE01000041
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
22829
22902
+
Gly
TCC
[ENA]
¢þ
>WENV170728907
LULF01002419
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
646
719
+
Gly
TCC
[ENA]
¢þ
>WENV170729751
LULG01000879
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
1456
1383
-
Gly
TCC
[ENA]
¢þ
>WENV170732481
LULJ01000026
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
47877
47804
-
Gly
TCC
[ENA]
¢þ
>WENV170734528
LULK01008756
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
764
837
+
Gly
TCC
[ENA]
¢þ
>WENV170736419
LULM01002845
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
4569
4642
+
Gly
TCC
[ENA]
¢þ
>WENV170737600
LULO01000905
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
27825
27898
+
Gly
TCC
[ENA]
¢þ
>WENV170738649
LULP01001529
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
2582
2655
+
Gly
TCC
[ENA]
¢þ
>WENV170739707
LULQ01009178
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
2629
2556
-
Gly
TCC
[ENA]
¢þ
>WENV170742142
LULU01002114
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
1452
1525
+
Gly
TCC
[ENA]
¢þ
>WENV170742653
LULV01000036
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
58052
57979
-
Gly
TCC
[ENA]
¢þ
>WENV170743450
LULW01000090
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
29484
29557
+
Gly
TCC
[ENA]
¢þ
>WENV170759512
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
1181415
1181488
+
Gly
TCC
[ENA]
¢þ
>WENV170761399
LUMV01000202
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
15860
15787
-
Gly
TCC
[ENA]
¢þ
>C181133059
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
1346587
1346660
+
Gly
TCC
-
¡û
>C191000345
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
1111272
1111345
+
Gly
TCC
-
¡û
>C191000582
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
1930869
1930796
-
Gly
TCC
-
¡û
>C191163794
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
1846899
1846972
+
Gly
TCC
-
¡û
>W09102953
AAIP01000007
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
67962
67889
-
Gly
TCC
[ENA]
¡û
>W1910501777
FYAT01000015
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
9928
10001
+
Gly
TCC
[ENA]
¡û
>W1910549093
FZPA01000001
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
537124
537197
+
Gly
TCC
[ENA]
¡û
>W1910744335
MIAL01000013
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
99309
99382
+
Gly
TCC
[ENA]
¡û
>W1910744412
MIAM01000066
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
16093
16020
-
Gly
TCC
[ENA]
¡û
>W1910934245
NIWD01000006
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
6555
6482
-
Gly
TCC
[ENA]
¡û
>W1911411551
NWUR01000001
Alphaproteobacteria
Sphingopyxis terrae DSM 24316 [NWUR]
218458
218531
+
Gly
TCC
[ENA]
¡û
>W1810107953
PHFW01000002
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
214199
214272
+
Gly
TCC
[ENA]
¡û
>C151044401
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
2423474
2423401
-
Gly
TCC
[Ensembl]
¡û
>C151048380
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
2266046
2265973
-
Gly
TCC
[Ensembl]
¡û
>C151051499
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
1692332
1692405
+
Gly
TCC
-
¡û
>W1510015774
BBRO01000001
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
1400393
1400466
+
Gly
TCC
[ENA]
¡û
>W1510024391
CCBH010000160
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
61711
61784
+
Gly
TCC
[ENA]
¡û
>C11116153
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
150063
150136
+
Gly
TCC
[Ensembl]
¡û
>W1511221175
JNFC01000045
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
177417
177344
-
Gly
TCC
[ENA]
¡û
>W1511221230
JNFD01000047
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
210245
210318
+
Gly
TCC
[ENA]
¡û
>W1511324676
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
639363
639290
-
Gly
TCC
[ENA]
¡û
>C161021379
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
1310879
1310952
+
Gly
TCC
[Ensembl]
¡û
>C161040516
CP012199
Alphaproteobacteria
Sphingopyxis granuli TFA [CP012199]
2776347
2776274
-
Gly
TCC
[Ensembl]
¡û
>C161043648
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
1416863
1416936
+
Gly
TCC
[Ensembl]
¡û
>C161055626
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
3061758
3061685
-
Gly
TCC
[Ensembl]
¡û
>C161055678
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
2687544
2687471
-
Gly
TCC
-
¡û
>W121009694
AGFM01000025
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
49962
50035
+
Gly
TCC
[ENA]
¡û
>W1610071356
BCUA01000006
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
89225
89152
-
Gly
TCC
[ENA]
¡û
>W1610077671
BCZQ01000004
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
18301
18228
-
Gly
TCC
[ENA]
¡û
>W1610727225
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
938109
938182
+
Gly
TCC
[ENA]
¡û
>W1610727344
LMGI01000001
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
513135
513062
-
Gly
TCC
[ENA]
¡û
>W1610729748
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
706841
706914
+
Gly
TCC
[ENA]
¡û
>W1610770861
LNRR01000001
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
475217
475290
+
Gly
TCC
[ENA]
¡û
>W1610770909
LNRS01000001
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
275517
275444
-
Gly
TCC
[ENA]
¡û
>W1610770955
LNRT01000001
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
275517
275444
-
Gly
TCC
[ENA]
¡û
>W1610770998
LNRU01000001
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
475301
475374
+
Gly
TCC
[ENA]
¡û
>W1610771041
LNRV01000003
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
173028
173101
+
Gly
TCC
[ENA]
¡û
>W1610771118
LNRW01000019
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
71654
71581
-
Gly
TCC
[ENA]
¡û
>W1610771142
LNRX01000004
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
222339
222266
-
Gly
TCC
[ENA]
¡û
>W1610771201
LNRY01000012
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
71069
71142
+
Gly
TCC
[ENA]
¡û
>W1610771240
LNRZ01000004
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
214506
214433
-
Gly
TCC
[ENA]
¡û
>W1610771271
LNSA01000001
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
152411
152338
-
Gly
TCC
[ENA]
¡û
>W1610771334
LNSB01000030
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
6106
6179
+
Gly
TCC
[ENA]
¡û
>W1610771398
LNSC01000109
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
3858
3785
-
Gly
TCC
[ENA]
¡û
>W1610771410
LNSD01000003
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1610771465
LNSE01000005
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1610771508
LNSF01000004
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1610771553
LNSG01000004
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1610771591
LNSH01000004
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1610771640
LNSI01000004
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1610771677
LNSJ01000002
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
98577
98504
-
Gly
TCC
[ENA]
¡û
>W1610771734
LNSK01000002
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
409960
409887
-
Gly
TCC
[ENA]
¡û
>W1610938948
LURA01000002
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
114930
115003
+
Gly
TCC
[ENA]
¡û
>W1610938992
LURB01000017
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
58052
57979
-
Gly
TCC
[ENA]
¡û
>W1610939036
LURC01000380
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
1452
1525
+
Gly
TCC
[ENA]
¡û
>W1610939080
LURE01000036
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
2582
2655
+
Gly
TCC
[ENA]
¡û
>W1610939091
LURF01000213
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
764
837
+
Gly
TCC
[ENA]
¡û
>W1610939115
LURG01000155
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
1456
1383
-
Gly
TCC
[ENA]
¡û
>W1610939137
LURH01000007
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
55206
55279
+
Gly
TCC
[ENA]
¡û
>W1610939175
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
1181415
1181488
+
Gly
TCC
[ENA]
¡û
>W1710068721
BCUA01000006
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
89225
89152
-
Gly
TCC
[ENA]
¡û
>W1710075309
BCZQ01000004
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
18301
18228
-
Gly
TCC
[ENA]
¡û
>W1710540052
FNWK01000002
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
547317
547244
-
Gly
TCC
[ENA]
¡û
>W1710602895
FUYP01000017
Alphaproteobacteria
Sphingopyxis flava [FUYP]
60706
60779
+
Gly
TCC
[ENA]
¡û
>W1710604576
FVZE01000002
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
217136
217209
+
Gly
TCC
[ENA]
¡û
>W1710609420
FXWL01000001
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
218874
218947
+
Gly
TCC
[ENA]
¡û
Select
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(or Accession No.)
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(Sample source for ENV)
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Direction
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Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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