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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780321 (77 seq.)
>W1710883135
LMVJ01000022
Alphaproteobacteria
Agrobacterium radiobacter tumefaciens [LMVJ]
188492
188565
+
Gln
CTG
[ENA]
¡û
>W1710883160
LMVK01000010
Alphaproteobacteria
Agrobacterium tumefaciens str. B6 [LMVK]
73511
73438
-
Gln
CTG
[ENA]
¡û
>W131036055
AKIA01000022
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii TA1 [AKIA]
354234
354161
-
Gln
CTG
[ENA]
¡û
>W131158489
AQUC01000006
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae TOM [AQUC]
504865
504792
-
Gln
CTG
[ENA]
¡û
>W131158520
AQUD01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii SRDI565 [AQUD]
4460298
4460225
-
Gln
CTG
[ENA]
¡û
>W131158811
AQUM01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae WSM1481 [AQUM]
3703590
3703517
-
Gln
CTG
[ENA]
¡û
>W131158875
AQUN01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii SRDI943 [AQUN]
339396
339323
-
Gln
CTG
[ENA]
¡û
>W131160132
AQWI01000054
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae Ps8 [AQWI]
120368
120441
+
Gln
CTG
[ENA]
¡û
>W131163354
AQZR01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. phaseoli 4292 [AQZR]
4497460
4497387
-
Gln
CTG
[ENA]
¡û
>W131167251
ARDC01000010
Alphaproteobacteria
Rhizobium gallicum bv. gallicum R602sp [ARDC]
260084
260157
+
Gln
CTG
[ENA]
¡û
>W131167835
ARDP01000090
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae Vc2 [ARDP]
41151
41078
-
Gln
CTG
[ENA]
¡û
>W131167957
ARDR01000079
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae Vh3 [ARDR]
43884
43811
-
Gln
CTG
[ENA]
¡û
>W131168181
ARDW01000015
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae 128C53 [ARDW]
13604
13531
-
Gln
CTG
[ENA]
¡û
>W1711169142
LVYU01000110
Alphaproteobacteria
Rhizobium leguminosarum [LVYU]
115699
115772
+
Gln
CTG
[ENA]
¡û
>W1711172084
LWBS01000413
Alphaproteobacteria
Rhizobium leguminosarum [LWBS]
29242
29315
+
Gln
CTG
[ENA]
¡û
>W131182520
ARQL01000014
Alphaproteobacteria
Agrobacterium sp. 224MFTsu3.1 [ARQL]
188033
188106
+
Gln
CTG
[ENA]
¡û
>W131183162
ARRT01000006
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae 248 [ARRT]
511360
511287
-
Gln
CTG
[ENA]
¡û
>W1711213937
LXKS01000039
Alphaproteobacteria
Agrobacterium tumefaciens [LXKS]
73488
73415
-
Gln
CTG
[ENA]
¡û
>W131203212
ASXY01000120
Alphaproteobacteria
Agrobacterium radiobacter DSM 30147 [ASXY]
1592
1665
+
Gln
CTG
[ENA]
¡û
>W131214070
ATTN01000008
Alphaproteobacteria
Rhizobium leguminosarum bv. phaseoli FA23 [ATTN]
27541
27468
-
Gln
CTG
[ENA]
¡û
>W131214182
ATTP01000010
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae GB30 [ATTP]
177786
177859
+
Gln
CTG
[ENA]
¡û
>W131219531
ATYQ01000019
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae VF39 [ATYQ]
64496
64569
+
Gln
CTG
[ENA]
¡û
>W131219977
ATYZ01000009
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae UPM1131 [ATYZ]
80847
80774
-
Gln
CTG
[ENA]
¡û
>W1711505816
MKVW01000001
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
778733
778660
-
Gln
CTG
[ENA]
¡û
>W1711642795
MPZP01000006
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae [MPZP]
270416
270343
-
Gln
CTG
[ENA]
¡û
>W1711667167
MRDG01000008
Alphaproteobacteria
Agrobacterium radiobacter tumefaciens [MRDG]
188391
188464
+
Gln
CTG
[ENA]
¡û
>W1711667372
MRDL01000007
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae USDA 2370 [MRDL]
13406
13333
-
Gln
CTG
[ENA]
¡û
>W1711667425
MRDM01000008
Alphaproteobacteria
Rhizobium laguerreae [MRDM]
264695
264768
+
Gln
CTG
[ENA]
¡û
>W1711959719
NBZF01000014
Alphaproteobacteria
Agrobacterium tumefaciens [NBZF]
72125
72052
-
Gln
CTG
[ENA]
¡û
>C171075915
CP018228
Alphaproteobacteria
Rhizobium leguminosarum Vaf-108 [CP018228]
3421439
3421512
+
Gln
CTG
-
¡û
>C018728
AM236080
Alphaproteobacteria
Rhizobium johnstonii 3841 [AM236080]
909089
909016
-
Gln
CTG
[Ensembl]
¡û
>WENV180006404
FLRY01033996
[FLRY] metagenome; saliva
166
239
+
Gln
CTG
[ENA]
¢þ
>W141022676
AJUI01000038
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CC278f [AJUI]
677222
677295
+
Gln
CTG
[ENA]
¡û
>W08007038
ABJS01000002
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM1325 [ABJS]
165705
165635
-
Gln
CTG
[ENA]
¡û
>W141168398
AXUY01000019
Alphaproteobacteria
Agrobacterium sp. UNC420CL41Cvi [AXUY]
33763
33690
-
Gln
CTG
[ENA]
¡û
>W141220313
AZXS01000073
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CC283b [AZXS]
11065
10992
-
Gln
CTG
[ENA]
¡û
>WENV183727311
PJTO01025846
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
89
162
+
Gln
CTG
[ENA]
¢þ
>WENV183739472
PJUE01021518
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
124
197
+
Gln
CTG
[ENA]
¢þ
>C181068717
CP022564
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae BIHB 1148 [CP022564]
2314505
2314578
+
Gln
CTG
-
¡û
>C181070656
CP022665
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae BIHB 1217 [CP022665]
1332740
1332813
+
Gln
CTG
-
¡û
>C181110712
CP025012
Alphaproteobacteria
Rhizobium leguminosarum Norway [CP025012]
482581
482508
-
Gln
CTG
-
¡û
>C181118173
CP025509
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae UPM791 [CP025509]
495732
495659
-
Gln
CTG
-
¡û
>C181192351
CP030760
Alphaproteobacteria
Rhizobium leguminosarum ATCC 14479 [CP030760]
3976052
3975979
-
Gln
CTG
-
¡û
>C191097774
CP032927
Alphaproteobacteria
Agrobacterium tumefaciens 1D1460 [CP032926, CP032927]
1131815
1131742
-
Gln
CTG
-
¡û
>C191098375
CP033032
Alphaproteobacteria
Agrobacterium tumefaciens 12D1 [CP033031, CP033032]
1144199
1144126
-
Gln
CTG
-
¡û
>C191172793
CP039889
Alphaproteobacteria
Agrobacterium tumefaciens CFBP5499 [CP039888, CP039889]
1332680
1332607
-
Gln
CTG
-
¡û
>C191172900
CP039898
Alphaproteobacteria
Agrobacterium tumefaciens CFBP5877 [CP039897, CP039898]
1333886
1333813
-
Gln
CTG
-
¡û
>C191173060
CP039911
Alphaproteobacteria
Agrobacterium tumefaciens CFBP6625 [CP039910, CP039911]
1123710
1123637
-
Gln
CTG
-
¡û
>C191173114
CP039917
Alphaproteobacteria
Agrobacterium tumefaciens CFBP6626 [CP039916, CP039917]
1154884
1154811
-
Gln
CTG
-
¡û
>W141560485
JHXQ01000005
Alphaproteobacteria
Allorhizobium undicola ORS 992 = ATCC 700741 [JHXQ]
238715
238788
+
Gln
CTG
[ENA]
¡û
>W1910199551
FBWC01000029
Alphaproteobacteria
Agrobacterium tumefaciens str. Kerr 14 [FBWC]
46747
46674
-
Gln
CTG
[ENA]
¡û
>W1910199644
FBWE01000026
Alphaproteobacteria
Agrobacterium genomosp. 5 5 str. CFBP 6626 [FBWE]
187510
187583
+
Gln
CTG
[ENA]
¡û
>W1910199687
FBWF01000013
Alphaproteobacteria
Agrobacterium tumefaciens str. CFBP 5621 [FBWF]
196264
196337
+
Gln
CTG
[ENA]
¡û
>W1910199936
FBWM01000042
Alphaproteobacteria
Agrobacterium sp. NCPPB 925 6 str. NCPPB 925 [FBWM]
563925
563998
+
Gln
CTG
[ENA]
¡û
>W1910200044
FCNL01000034
Alphaproteobacteria
Agrobacterium tumefaciens str. B6 [FCNL]
814491
814418
-
Gln
CTG
[ENA]
¡û
>C09108854
CP001622
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM1325 [CP001622]
491017
490944
-
Gln
CTG
[Ensembl]
¡û
>W1910839930
MZMU01000003
Alphaproteobacteria
Rhizobium leguminosarum Tri-43 [MZMU]
642950
642877
-
Gln
CTG
[ENA]
¡û
>W1911082825
NNAQ01000002
Alphaproteobacteria
Agrobacterium tumefaciens 186 [NNAQ]
246274
246201
-
Gln
CTG
[ENA]
¡û
>W1911655816
QERG01000007
Alphaproteobacteria
Rhizobium sp. SEMIA 439 [QERG]
72221
72148
-
Gln
CTG
[ENA]
¡û
>W1810108812
PHGS01000029
Alphaproteobacteria
Agrobacterium sp. LAD9 [PHGS]
190165
190238
+
Gln
CTG
[ENA]
¡û
>W1810504573
QBLB01000051
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae USDA 2370 [QBLB]
188972
189045
+
Gln
CTG
[ENA]
¡û
>W1810693221
QLLD01000005
Alphaproteobacteria
Agrobacterium tumefaciens HAMBI_105 [QLLD]
188230
188303
+
Gln
CTG
[ENA]
¡û
>C151016679
CP007045
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM1689 [CP007045]
535401
535328
-
Gln
CTG
[Ensembl]
¡û
>W1511358841
JRXL01000012
Alphaproteobacteria
Rhizobium brockwellii bv. trifolii CC275e [JRXL]
950522
950449
-
Gln
CTG
[ENA]
¡û
>W1511434185
JUHU01000015
Alphaproteobacteria
Rhizobium leguminosarum OV152 [JUHU]
1338
1265
-
Gln
CTG
[ENA]
¡û
>W11172477
AFSD01000003
Alphaproteobacteria
Agrobacterium tumefaciens F2 [AFSD]
526678
526605
-
Gln
CTG
[ENA]
¡û
>C161095823
CP016286
Alphaproteobacteria
Rhizobium leguminosarum Vaf10 [CP016286]
4944808
4944735
-
Gln
CTG
-
¡û
>W121018031
AGSM01000014
Alphaproteobacteria
Agrobacterium tumefaciens CCNWGS0286 [AGSM]
70901
70828
-
Gln
CTG
[ENA]
¡û
>W121068164
AJUF01000014
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae WSM1455 [AJUF]
27221
27148
-
Gln
CTG
[ENA]
¡û
>W121068236
AJUH01000020
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WU95 [AJUH]
769134
769061
-
Gln
CTG
[ENA]
¡û
>W1610745061
LMVJ01000022
Alphaproteobacteria
Agrobacterium radiobacter tumefaciens [LMVJ]
188492
188565
+
Gln
CTG
[ENA]
¡û
>W1610745086
LMVK01000010
Alphaproteobacteria
Agrobacterium tumefaciens str. B6 [LMVK]
73511
73438
-
Gln
CTG
[ENA]
¡û
>W1610978937
LVYU01000110
Alphaproteobacteria
Rhizobium leguminosarum [LVYU]
115699
115772
+
Gln
CTG
[ENA]
¡û
>W1610980689
LWBS01000413
Alphaproteobacteria
Rhizobium leguminosarum [LWBS]
29242
29315
+
Gln
CTG
[ENA]
¡û
>W1610995854
LXFU01000036
Alphaproteobacteria
Rhizobium sp. WYCCWR10014 [LXFU]
110774
110847
+
Gln
CTG
[ENA]
¡û
>W1611000941
LXKS01000039
Alphaproteobacteria
Agrobacterium tumefaciens [LXKS]
73488
73415
-
Gln
CTG
[ENA]
¡û
>W1710610134
FYEM01000010
Alphaproteobacteria
Agrobacterium sp. 719_389 [FYEM]
188100
188173
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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