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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780394 (39 seq.)
>A171000756
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
1324248
1324178
-
Gly
CCC
-
¡û
>A171003093
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1638200
1638270
+
Gly
CCC
-
¡û
>A171006702
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
1856951
1857021
+
Gly
CCC
-
¡û
>A171006743
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
1968891
1968961
+
Gly
CCC
-
¡û
>A171006892
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
1507474
1507404
-
Gly
CCC
-
¡û
>A171006905
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
670517
670589
+
Gly
CCC
-
¡û
>A171007258
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
1223002
1222932
-
Gly
CCC
-
¡û
>WENV180318357
OBKM01000504
[OBKM] metagenome; water
12578
12508
-
Gly
CCC
[ENA]
¢þ
>WENV170008875
APHM01012196
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
3232
3302
+
Gly
CCC
[ENA]
¢þ
>WENV170008884
APHM01012905
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
528
456
-
Gly
CCC
[ENA]
¢þ
>WENV170660074
JXWS01129990
[JXWS] soil metagenome; rice field; elevated CO2
435
507
+
Gly
CCC
[ENA]
¢þ
>WENV170661212
JXWU01131780
[JXWU] soil metagenome; rice field; organic control Plot
63
136
+
Gly
CCC
[ENA]
¢þ
>WENV170680081
LFCJ01003843
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2514
2584
+
Gly
CCC
[ENA]
¢þ
>WENV170681809
LFFM01002963
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2612
2542
-
Gly
CCC
[ENA]
¢þ
>WENV170682127
LFFM01006348
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1858
1929
+
Gly
CCC
[ENA]
¢þ
>WENV170682286
LFFM01008592
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2080
2150
+
Gly
CCC
[ENA]
¢þ
>WENV170702015
LKMJ01000273
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
28630
28702
+
Gly
CCC
[ENA]
¢þ
>WENV170703214
LKMJ01008074
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2844
2774
-
Gly
CCC
[ENA]
¢þ
>W1910227149
FNLC01000003
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
40553
40624
+
Gly
CCC
[ENA]
¡û
>W1910229688
FOCX01000003
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
250103
250031
-
Gly
CCC
[ENA]
¡û
>W1910230261
FOKW01000013
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
66421
66493
+
Gly
CCC
[ENA]
¡û
>W1910230427
FORO01000003
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
14274
14344
+
Gly
CCC
[ENA]
¡û
>W1911433981
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
3064485
3064557
+
Gly
CCC
[ENA]
¡û
>W1911493161
OBEJ01000003
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
30374
30444
+
Gly
CCC
[ENA]
¡û
>W1911591318
PKKI01000004
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
129114
129044
-
Gly
CCC
[ENA]
¡û
>W1911693738
QLVG01000025
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
40814
40886
+
Gly
CCC
[ENA]
¡û
>W1911696820
QNGA01000003
Euryarchaeota
halophilic archaeon H22 [QNGA]
297571
297641
+
Gly
CCC
[ENA]
¡û
>W1911709876
QPMJ01000002
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
1085683
1085754
+
Gly
CCC
[ENA]
¡û
>W1610000855
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
2054059
2053989
-
Gly
CCC
[ENA]
¡û
>W1610003636
AGCY01000235
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
3232
3302
+
Gly
CCC
[ENA]
¡û
>W1610004045
AGFZ01000017
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
9155
9083
-
Gly
CCC
[ENA]
¡û
>W1610004092
AGIM01000005
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
136500
136430
-
Gly
CCC
[ENA]
¡û
>W1610012167
AOIC01000061
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
36258
36188
-
Gly
CCC
[ENA]
¡û
>W1610014414
AOLZ01000029
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
77597
77669
+
Gly
CCC
[ENA]
¡û
>W1610014473
AOMA01000154
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
8218
8288
+
Gly
CCC
[ENA]
¡û
>W1610082981
CBMA010000025
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
241247
241177
-
Gly
CCC
[ENA]
¡û
>W1610083010
CBMB010000003
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
496575
496645
+
Gly
CCC
[ENA]
¡û
>W1610682553
LKNC01000199
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
2080
2150
+
Gly
CCC
[ENA]
¡û
>W1610682668
LKNG01000148
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
1858
1929
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK