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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780436 (37 seq.)
>W131050730
AMXA01000019
Betaproteobacteria
Thauera sp. 28 [AMXA]
17164
17091
-
Cys
GCA
[ENA]
¡û
>W131050774
AMXB01000021
Betaproteobacteria
Thauera sp. 27 [AMXB]
57888
57961
+
Cys
GCA
[ENA]
¡û
>W131050795
AMXC01000001
Betaproteobacteria
Thauera sp. 63 [AMXC]
266752
266679
-
Cys
GCA
[ENA]
¡û
>W131050893
AMXD01000177
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
2649
2722
+
Cys
GCA
[ENA]
¡û
>W131050949
AMXE01000105
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
2376
2303
-
Cys
GCA
[ENA]
¡û
>W131050990
AMXF01000151
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
3839
3766
-
Cys
GCA
[ENA]
¡û
>W1711326593
MBFM01000002
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
398018
397945
-
Cys
GCA
[ENA]
¡û
>C171085163
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
2621472
2621545
+
Cys
GCA
-
¡û
>WENV180297238
OBJA01016751
[OBJA] soil metagenome; sediment, water from around vicinity
864
791
-
Cys
GCA
[ENA]
¢þ
>W141078502
ATJV01000002
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
99669
99596
-
Cys
GCA
[ENA]
¡û
>W08008016
ABKT01000035
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
14476
14549
+
Cys
GCA
[ENA]
¡û
>WENV170000227
AERA01027920
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
837
910
+
Cys
GCA
[ENA]
¢þ
>WENV170560996
CZCA01001771
[CZCA] anaerobic digester metagenome; anaerobic digester
1308
1235
-
Cys
GCA
[ENA]
¢þ
>WENV170650347
JRYD01093594
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
115
42
-
Cys
GCA
[ENA]
¢þ
>WENV170654704
JRYL01007141
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
162
89
-
Cys
GCA
[ENA]
¢þ
>C181042987
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
1272568
1272641
+
Cys
GCA
-
¡û
>C181081484
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
1674743
1674670
-
Cys
GCA
-
¡û
>C181121204
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
2139332
2139259
-
Cys
GCA
-
¡û
>C181164171
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1743186
1743259
+
Cys
GCA
-
¡û
>C181165149
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
1178028
1178101
+
Cys
GCA
-
¡û
>C181176821
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
1808924
1808851
-
Cys
GCA
-
¡û
>W141561732
JHYR01000015
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
61137
61210
+
Cys
GCA
[ENA]
¡û
>W1911114352
NOIH01000007
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
169117
169190
+
Cys
GCA
[ENA]
¡û
>W1810444881
PZKC01000001
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
77993
78066
+
Cys
GCA
[ENA]
¡û
>C10113182
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
2294325
2294398
+
Cys
GCA
[Ensembl]
¡û
>WENV11100585
AERA01027920
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
837
910
+
Cys
GCA
[ENA]
¡û
>W1511398278
JTDM01000013
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
202
275
+
Cys
GCA
[ENA]
¡û
>W1511398285
JTDM01000013
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
25318
25245
-
Cys
GCA
[ENA]
¡û
>W1511686468
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
2530157
2530230
+
Cys
GCA
[ENA]
¡û
>W11185951
CACR01002192
Betaproteobacteria
Thauera selenatis AX [CACR]
7936
8009
+
Cys
GCA
[ENA]
¡û
>C161075091
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
901752
901825
+
Cys
GCA
[Ensembl]
¡û
>W1610042895
BAZL01000018
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
496
423
-
Cys
GCA
[ENA]
¡û
>W1610071714
BCUG01000053
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
41297
41224
-
Cys
GCA
[ENA]
¡û
>W1611063329
MBFM01000002
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
398018
397945
-
Cys
GCA
[ENA]
¡û
>W1710040055
BAZL01000018
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
496
423
-
Cys
GCA
[ENA]
¡û
>W1710068916
BCUG01000053
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
41297
41224
-
Cys
GCA
[ENA]
¡û
>W1710539445
FNVJ01000001
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
39794
39721
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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