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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780486 (98 seq.)
>W1710806515
LKBA01000004
Alphaproteobacteria
Aliiroseovarius crassostreae [LKBA]
515885
515812
-
Gly
TCC
[ENA]
¡û
>W131045404
AMRK01000009
Alphaproteobacteria
Celeribacter baekdonensis B30 [AMRK]
167820
167747
-
Gly
TCC
[ENA]
¡û
>W1710996702
LQBQ01000034
Alphaproteobacteria
Ruegeria marisrubri ZGT118 [LQBQ]
324450
324377
-
Gly
TCC
[ENA]
¡û
>W1711054832
LRUC01000040
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
40075
40002
-
Gly
TCC
[ENA]
¡û
>W1711054869
LRUD01000042
Alphaproteobacteria
Celeribacter halophilus [LRUD]
129041
129114
+
Gly
TCC
[ENA]
¡û
>C171032451
CP014595
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
1235654
1235581
-
Gly
TCC
-
¡û
>C171035298
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
3330752
3330825
+
Gly
TCC
-
¡û
>C171067791
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2454724
2454651
-
Gly
TCC
-
¡û
>C171092089
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
774389
774462
+
Gly
TCC
-
¡û
>C018358
CP000362
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [CP000362]
1883048
1883121
+
Gly
TCC
[Ensembl]
¡û
>w023721
AAYC01000006
Alphaproteobacteria
Roseobacter sp. SK209-2-6 [AAYC]
263080
263005
-
Gly
TCC
[ENA]
¡û
>WENV180105730
OAPD01172562
[OAPD] marine metagenome; 2010
162
235
+
Gly
TCC
[ENA]
¢þ
>WENV180108306
OAPH01088525
[OAPH] marine metagenome; seawater
72
145
+
Gly
TCC
[ENA]
¢þ
>WENV180109092
OAPJ01005671
[OAPJ] marine metagenome; ENVO 00002150
7
80
+
Gly
TCC
[ENA]
¢þ
>WENV180208658
OBAJ01014702
[OBAJ] marine metagenome; Coastal water
323
396
+
Gly
TCC
[ENA]
¢þ
>WENV180294028
OBIY01010894
[OBIY] beach sand metagenome; beach sand
359
432
+
Gly
TCC
[ENA]
¢þ
>WENV180357247
OBNN01000091
[OBNN] marine metagenome; Coastal water
2797
2724
-
Gly
TCC
[ENA]
¢þ
>WENV180365399
OBOB01120347
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
221
294
+
Gly
TCC
[ENA]
¢þ
>WENV180380986
OBOR01075637
[OBOR] marine metagenome; ENVO 00002227
276
203
-
Gly
TCC
[ENA]
¢þ
>WENV180594531
OCOZ01057411
[OCOZ] marine metagenome; vv
262
189
-
Gly
TCC
[ENA]
¢þ
>W08005911
ABIG01000005
Alphaproteobacteria
Roseobacter litoralis Och 149 [ABIG]
108703
108776
+
Gly
TCC
[ENA]
¡û
>WENV182585482
OJHH01031247
[OJHH] seawater metagenome; Sea water
136
63
-
Gly
TCC
[ENA]
¢þ
>W141284780
JAMD01000003
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae H3 [JAMD]
60712
60639
-
Gly
TCC
[ENA]
¡û
>WENV170014527
AYRH01001012
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
617
544
-
Gly
TCC
[ENA]
¢þ
>WENV170016444
AZIK01005588
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
475
402
-
Gly
TCC
[ENA]
¢þ
>WENV170120944
CENL01026058
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1822
1895
+
Gly
TCC
[ENA]
¢þ
>WENV170228563
CEQG01021293
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1011
938
-
Gly
TCC
[ENA]
¢þ
>WENV170817377
MDSX01049179
[MDSX] marine metagenome; seawater
3412
3485
+
Gly
TCC
[ENA]
¢þ
>WENV170935658
MDTG01260730
[MDTG] marine metagenome; seawater
5592
5665
+
Gly
TCC
[ENA]
¢þ
>C181060533
CP022189
Alphaproteobacteria
Alloyangia pacifica YSBP01 [CP022189, CP022190]
2495768
2495695
-
Gly
TCC
-
¡û
>C181060588
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
3777256
3777183
-
Gly
TCC
-
¡û
>C181064476
CP022415
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SMR1 [CP022415]
632297
632370
+
Gly
TCC
-
¡û
>C181123421
CP025815
Alphaproteobacteria
Sulfitobacter sp. JL08 [CP025815]
920776
920849
+
Gly
TCC
-
¡û
>C181152298
CP027407
Alphaproteobacteria
Roseobacter denitrificans FDAARGOS_309 [CP027407]
4039232
4039305
+
Gly
TCC
-
¡û
>C191084704
CP032125
Alphaproteobacteria
Profundibacter amoris BAR1 [CP032125]
689662
689735
+
Gly
TCC
-
¡û
>C191184394
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
1049484
1049557
+
Gly
TCC
-
¡û
>W141564872
JIBC01000003
Alphaproteobacteria
Sulfitobacter sp. 20_GPM-1509m [JIBC]
177564
177491
-
Gly
TCC
[ENA]
¡û
>WENV023411
AACY020723012
Marine microbial communities from Global Ocean Sampling (GOS)
299
226
-
Gly
TCC
[ENA]
>W09118393
ACCW01000036
Alphaproteobacteria
Rhodobacteraceae bacterium KLH11 [ACCW]
18110
18183
+
Gly
TCC
[ENA]
¡û
>W141813590
JQEZ01000001
Alphaproteobacteria
Ruegeria halocynthiae [JQEZ]
931081
931008
-
Gly
TCC
[ENA]
¡û
>W1910285083
FREU01000007
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-30 [FREU]
140797
140724
-
Gly
TCC
[ENA]
¡û
>W1910285276
FREY01000009
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-04 [FREY]
164734
164661
-
Gly
TCC
[ENA]
¡û
>W1910285361
FRFA01000012
Alphaproteobacteria
Tateyamaria sp. Alg231-49 [FRFA]
2567
2494
-
Gly
TCC
[ENA]
¡û
>W1910442622
FWFJ01000012
Alphaproteobacteria
Roseovarius gaetbuli CECT 8370 [FWFJ]
18132
18205
+
Gly
TCC
[ENA]
¡û
>W1910442718
FWFL01000007
Alphaproteobacteria
Roseovarius litorisediminis CECT 8287 [FWFL]
187709
187636
-
Gly
TCC
[ENA]
¡û
>W1910443084
FWFT01000003
Alphaproteobacteria
Pseudooctadecabacter jejudonensis CECT 8397 [FWFT]
273018
272945
-
Gly
TCC
[ENA]
¡û
>W1910443261
FWFX01000017
Alphaproteobacteria
Roseovarius albus CECT 7450 [FWFX]
47568
47641
+
Gly
TCC
[ENA]
¡û
>W1910469006
FWXB01000019
Alphaproteobacteria
Roseovarius aestuarii CECT 7745 [FWXB]
50386
50459
+
Gly
TCC
[ENA]
¡û
>W1910499074
FXXQ01000014
Alphaproteobacteria
Boseongicola aestuarii CECT 8489 [FXXQ]
9673
9746
+
Gly
TCC
[ENA]
¡û
>W1910549026
FZOY01000016
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
3150
3077
-
Gly
TCC
[ENA]
¡û
>W1911281153
NTHN01000074
Alphaproteobacteria
Alloyangia mangrovi SAOS 153D [NTHN]
4650
4577
-
Gly
TCC
[ENA]
¡û
>W1911538423
OMOI01000002
Alphaproteobacteria
Aliiroseovarius pelagivivens CECT 8811 [OMOI]
366772
366845
+
Gly
TCC
[ENA]
¡û
>W1911538435
OMOJ01000001
Alphaproteobacteria
Pseudoprimorskyibacter insulae CECT 8871 [OMOJ]
481556
481629
+
Gly
TCC
[ENA]
¡û
>W1911538709
OMOR01000001
Alphaproteobacteria
Ascidiaceihabitans donghaensis CECT 8599 [OMOR]
2873432
2873359
-
Gly
TCC
[ENA]
¡û
>W1911539295
OMPR01000018
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 [OMPR]
57600
57527
-
Gly
TCC
[ENA]
¡û
>W1911539364
OMPT01000009
Alphaproteobacteria
Sulfitobacter mediterraneus EL44 [OMPT]
49362
49435
+
Gly
TCC
[ENA]
¡û
>W1911544888
OUMZ01000006
Alphaproteobacteria
Roseovarius sp. EL26 [OUMZ]
597652
597725
+
Gly
TCC
[ENA]
¡û
>W1911544902
OUMZ01000007
Alphaproteobacteria
Roseovarius sp. EL26 [OUMZ]
2240801
2240728
-
Gly
TCC
[ENA]
¡û
>W1810063500
PDUV01000010
Alphaproteobacteria
Rhodobacteraceae bacterium 4F10 [PDUV]
152580
152507
-
Gly
TCC
[ENA]
¡û
>W1810101638
PGTB01000007
Alphaproteobacteria
Pseudooceanicola lipolyticus 157 [PGTB]
12553
12480
-
Gly
TCC
[ENA]
¡û
>W1810364316
PVTD01000001
Alphaproteobacteria
Aliiruegeria haliotis DSM 29328 [PVTD]
1157782
1157855
+
Gly
TCC
[ENA]
¡û
>W1810364946
PVTQ01000002
Alphaproteobacteria
Donghicola tyrosinivorans DSM 100212 [PVTQ]
423896
423969
+
Gly
TCC
[ENA]
¡û
>W1810400778
PYGJ01000005
Alphaproteobacteria
Shimia abyssi DSM 100673 [PYGJ]
226354
226281
-
Gly
TCC
[ENA]
¡û
>W1810476788
QAOH01000001
Alphaproteobacteria
Celeribacter persicus DSM 100434 [QAOH]
113831
113904
+
Gly
TCC
[ENA]
¡û
>W1810494745
QBFE01000011
Alphaproteobacteria
Sulfitobacter sp. DFL-23 [QBFE]
691070
690997
-
Gly
TCC
[ENA]
¡û
>W1810494796
QBFF01000041
Alphaproteobacteria
Pseudosulfitobacter sp. DSM 107133 PIC-76 [QBFF]
51062
50989
-
Gly
TCC
[ENA]
¡û
>W1810532420
QCYG01000005
Alphaproteobacteria
Thalassorhabdomicrobium marinisediminis BH-SD16 [QCYG]
163676
163749
+
Gly
TCC
[ENA]
¡û
>W1810685585
QKZJ01000010
Alphaproteobacteria
Celeribacter halophilus DSM 26270 [QKZJ]
1991
1918
-
Gly
TCC
[ENA]
¡û
>W1810724985
QOCE01000029
Alphaproteobacteria
Phaeobacter gallaeciensis C3M10 [QOCE]
120245
120318
+
Gly
TCC
[ENA]
¡û
>C11118654
CP002623
Alphaproteobacteria
Roseobacter litoralis Och 149 [CP002623]
1153588
1153661
+
Gly
TCC
[Ensembl]
¡û
>W1511482994
JWLL01000003
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
197870
197797
-
Gly
TCC
[ENA]
¡û
>W11152725
AEYW01000013
Alphaproteobacteria
Ruegeria conchae TW15 [AEYW]
228427
228500
+
Gly
TCC
[ENA]
¡û
>W1511686513
LFTY01000002
Alphaproteobacteria
Candidatus Rhodobacter lobularis symbiont of Oscarella lobularis [LFTY]
2600086
2600159
+
Gly
TCC
[ENA]
¡û
>W1610081479
BDDO01000005
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
170146
170219
+
Gly
TCC
[ENA]
¡û
>W1610093003
CYSG01000004
Alphaproteobacteria
Phaeobacter sp. CECT 5382 [CYSG]
2626
2699
+
Gly
TCC
[ENA]
¡û
>W1610094578
CYTW01000001
Alphaproteobacteria
Shimia thalassica CECT 7735 [CYTW]
1501680
1501753
+
Gly
TCC
[ENA]
¡û
>W1610630906
LIKT01000011
Alphaproteobacteria
Phaeobacter sp. 11ANDIMAR09 [LIKT]
95263
95190
-
Gly
TCC
[ENA]
¡û
>W1610670289
LKBA01000004
Alphaproteobacteria
Aliiroseovarius crassostreae [LKBA]
515885
515812
-
Gly
TCC
[ENA]
¡û
>W1610851359
LQBQ01000034
Alphaproteobacteria
Ruegeria marisrubri ZGT118 [LQBQ]
324450
324377
-
Gly
TCC
[ENA]
¡û
>W1610895878
LRUC01000040
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
40075
40002
-
Gly
TCC
[ENA]
¡û
>W1610895915
LRUD01000042
Alphaproteobacteria
Celeribacter halophilus [LRUD]
129041
129114
+
Gly
TCC
[ENA]
¡û
>W1710015346
AQQP01000002
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
30665
30592
-
Gly
TCC
[ENA]
¡û
>W1710080130
BDDO01000005
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
170146
170219
+
Gly
TCC
[ENA]
¡û
>W1710515041
FNBL01000007
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
41254
41327
+
Gly
TCC
[ENA]
¡û
>W1710516231
FNCL01000004
Alphaproteobacteria
Alloyangia pacifica [FNCL]
65300
65373
+
Gly
TCC
[ENA]
¡û
>W1710519005
FNEK01000025
Alphaproteobacteria
Aliiruegeria lutimaris [FNEK]
15627
15700
+
Gly
TCC
[ENA]
¡û
>W1710528900
FNNP01000001
Alphaproteobacteria
Ruegeria halocynthiae [FNNP]
1454094
1454021
-
Gly
TCC
[ENA]
¡û
>W1710531640
FNPR01000003
Alphaproteobacteria
Lentibacter algarum [FNPR]
152128
152055
-
Gly
TCC
[ENA]
¡û
>W1710543103
FNZQ01000006
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
127583
127656
+
Gly
TCC
[ENA]
¡û
>W1710555058
FOJB01000001
Alphaproteobacteria
Aliiroseovarius sediminilitoris [FOJB]
354048
354121
+
Gly
TCC
[ENA]
¡û
>W1710562004
FOOO01000003
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [FOOO]
268228
268155
-
Gly
TCC
[ENA]
¡û
>W1710565579
FORH01000008
Alphaproteobacteria
Celeribacter neptunius [FORH]
161621
161548
-
Gly
TCC
[ENA]
¡û
>W1710566420
FORY01000011
Alphaproteobacteria
Celeribacter halophilus [FORY]
2029
1956
-
Gly
TCC
[ENA]
¡û
>W1710576226
FOZW01000004
Alphaproteobacteria
Alloyangia pacifica [FOZW]
65300
65373
+
Gly
TCC
[ENA]
¡û
>W1710578586
FPBS01000001
Alphaproteobacteria
Aliiroseovarius crassostreae [FPBS]
270191
270118
-
Gly
TCC
[ENA]
¡û
>W1710584529
FQVP01000003
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae [FQVP]
667308
667381
+
Gly
TCC
[ENA]
¡û
>W1710586303
FQXC01000001
Alphaproteobacteria
Marivita hallyeonensis [FQXC]
414247
414320
+
Gly
TCC
[ENA]
¡û
>W1710616725
JFKD01000003
Alphaproteobacteria
Marivita cryptomonadis [JFKD]
132651
132578
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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