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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780488 (24 seq.)
>A171001147
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2291756
2291685
-
Gly
GCC
-
¡û
>A171001148
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2291367
2291297
-
Gly
GCC
-
¡û
>A171004188
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
2199833
2199762
-
Gly
GCC
-
¡û
>A171006719
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
325417
325345
-
Gly
GCC
-
¡û
>A171006760
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
313743
313671
-
Gly
GCC
-
¡û
>A171007270
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
578678
578748
+
Gly
GCC
-
¡û
>A171007445
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
1973926
1973997
+
Gly
GCC
-
¡û
>WENV180318423
OBKM01000781
[OBKM] metagenome; water
84
14
-
Gly
GCC
[ENA]
¢þ
>WENV180318712
OBKM01006104
[OBKM] metagenome; water
2808
2738
-
Gly
GCC
[ENA]
¢þ
>WENV170681066
LFFM01000016
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
86990
86920
-
Gly
GCC
[ENA]
¢þ
>WENV170681926
LFFM01004051
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
330
400
+
Gly
GCC
[ENA]
¢þ
>WENV170682229
LFFM01007639
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5582
5512
-
Gly
GCC
[ENA]
¢þ
>WENV170702215
LKMJ01000870
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1335
1265
-
Gly
GCC
[ENA]
¢þ
>WENV170702323
LKMJ01001273
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
765
835
+
Gly
GCC
[ENA]
¢þ
>W1610004168
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
1158647
1158718
+
Gly
GCC
[ENA]
¡û
>W1610012737
AOIS01000045
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
19600
19670
+
Gly
GCC
[ENA]
¡û
>W1610012738
AOIS01000045
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
20123
20193
+
Gly
GCC
[ENA]
¡û
>W1610085063
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
732804
732875
+
Gly
GCC
[ENA]
¡û
>W1610085128
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
726820
726749
-
Gly
GCC
[ENA]
¡û
>W1610085167
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
769632
769561
-
Gly
GCC
[ENA]
¡û
>W1610085206
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
768655
768584
-
Gly
GCC
[ENA]
¡û
>W1610085229
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
1790139
1790210
+
Gly
GCC
[ENA]
¡û
>W1610085262
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
732874
732945
+
Gly
GCC
[ENA]
¡û
>W1610085311
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
1746717
1746788
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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