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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780562 (25 seq.)
>W1711091955
LTDO01000003
Gammaproteobacteria
Francisella orientalis subsp. orientalis [LTDO]
73082
73009
-
Cys
GCA
[ENA]
¡û
>C171002487
CP009654
Gammaproteobacteria
Francisella frigiditurris CA97-1460 [CP009654]
914514
914587
+
Cys
GCA
-
¡û
>C171051178
CP016796
Gammaproteobacteria
Francisella uliginis TX07-7310 [CP016796]
1630101
1630028
-
Cys
GCA
-
¡û
>C171071981
CP018051
Gammaproteobacteria
Francisella orientalis F1 [CP018051]
1366629
1366556
-
Cys
GCA
-
¡û
>C08005026
CP000937
Gammaproteobacteria
Francisella philomiragia [CP000937]
1436417
1436490
+
Cys
GCA
[Ensembl]
¡û
>C181059150
CP022132
Gammaproteobacteria
Francisella halioticida DSM 23729 [CP022132]
1201634
1201561
-
Cys
GCA
-
¡û
>C181060825
CP022207
Gammaproteobacteria
Francisella noatunensis [CP022207]
1396573
1396500
-
Cys
GCA
-
¡û
>W09113778
ABYY01000014
Gammaproteobacteria
Francisella philomiragia subsp. philomiragia ATCC 25015 [ABYY]
150222
150295
+
Cys
GCA
[ENA]
¡û
>W141789952
JOUE01000006
Gammaproteobacteria
Francisella philomiragia [JOUE]
363363
363290
-
Cys
GCA
[ENA]
¡û
>C141010055
CP006875
Gammaproteobacteria
Francisella orientalis LADL 07-285A LADL--07-285A [CP006875]
1426419
1426346
-
Cys
GCA
[Ensembl]
¡û
>W1911687801
QLIS01000004
Gammaproteobacteria
Pseudofrancisella aestuarii SYSU WZ-2 [QLIS]
41230
41303
+
Cys
GCA
[ENA]
¡û
>C151049522
CP009343
Gammaproteobacteria
Francisella philomiragia O#319-029 [CP009343]
1600635
1600708
+
Cys
GCA
[Ensembl]
¡û
>C151050974
CP009436
Gammaproteobacteria
Francisella philomiragia O#319-067 [CP009436]
2034012
2033939
-
Cys
GCA
[Ensembl]
¡û
>C151051087
CP009440
Gammaproteobacteria
Francisella philomiragia GA01-2794 [CP009440]
1572172
1572099
-
Cys
GCA
[Ensembl]
¡û
>C151051127
CP009442
Gammaproteobacteria
Francisella philomiragia O#319-036 [FSC 153] [CP009442]
878185
878112
-
Cys
GCA
[Ensembl]
¡û
>C151051146
CP009444
Gammaproteobacteria
Francisella philomiragia GA01-2801 [CP009444]
958551
958624
+
Cys
GCA
[Ensembl]
¡û
>C151054386
CP009574
Gammaproteobacteria
Francisella sp. FSC1006 [CP009574]
1782793
1782866
+
Cys
GCA
[Ensembl]
¡û
>C151063479
CP010019
Gammaproteobacteria
Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L [CP010019]
667074
667001
-
Cys
GCA
[Ensembl]
¡û
>C151087388
CP011921
Gammaproteobacteria
Francisella orientalis FNO12 [CP011921]
1366699
1366626
-
Cys
GCA
[Ensembl]
¡û
>C151087460
CP011923
Gammaproteobacteria
Francisella orientalis FNO190 [CP011923]
1366610
1366537
-
Cys
GCA
[Ensembl]
¡û
>C151091896
CP012153
Gammaproteobacteria
Francisella orientalis FNO01 [CP012153]
1366791
1366718
-
Cys
GCA
-
¡û
>C11109284
CP002872
Gammaproteobacteria
Francisella salina TX07-7308 [CP002872]
975585
975658
+
Cys
GCA
[Ensembl]
¡û
>C121012427
CP003402
Gammaproteobacteria
Francisella orientalis str. Toba 04 [CP003402]
877072
877145
+
Cys
GCA
[Ensembl]
¡û
>WENV069065
AACY023751077
Marine microbial communities from Global Ocean Sampling (GOS)
940
1013
+
Cys
GCA
[ENA]
>W1610926051
LTDO01000003
Gammaproteobacteria
Francisella orientalis subsp. orientalis [LTDO]
73082
73009
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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