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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780576 (47 seq.)
>W1711115593
LUAH01000067
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
70703
70774
+
Trp
CCA
[ENA]
¡û
>W131205418
ATDL01000004
Bacteroidota
Sphingobacterium paucimobilis 1398 [ATDL]
230145
230216
+
Trp
CCA
[ENA]
¡û
>W1711506332
MKWH01000054
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
62114
62185
+
Trp
CCA
[ENA]
¡û
>W1711712794
MTCM01000005
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
13634
13563
-
Trp
CCA
[ENA]
¡û
>C171089493
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
1446401
1446472
+
Trp
CCA
-
¡û
>C171118427
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
1041669
1041740
+
Trp
CCA
-
¡û
>WENV183726892
PJTO01000376
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
14038
13967
-
Trp
CCA
[ENA]
¢þ
>WENV183727775
PJTP01000190
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
14038
13967
-
Trp
CCA
[ENA]
¢þ
>WENV183728807
PJTQ01000464
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
13810
13739
-
Trp
CCA
[ENA]
¢þ
>WENV183729695
PJTR01000018
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
238786
238857
+
Trp
CCA
[ENA]
¢þ
>WENV183730822
PJTS01000985
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
11757
11686
-
Trp
CCA
[ENA]
¢þ
>WENV183731059
PJTS01005906
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
679
750
+
Trp
CCA
[ENA]
¢þ
>WENV183731516
PJTT01000013
[PJTT] soil metagenome; Soil (2) enriched on wood chips
46992
46921
-
Trp
CCA
[ENA]
¢þ
>WENV183732353
PJTX01000041
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
4148
4077
-
Trp
CCA
[ENA]
¢þ
>WENV183732994
PJTY01000013
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
4148
4077
-
Trp
CCA
[ENA]
¢þ
>WENV183734068
PJTZ01000036
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
4148
4077
-
Trp
CCA
[ENA]
¢þ
>WENV183735099
PJUA01000893
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
8699
8770
+
Trp
CCA
[ENA]
¢þ
>WENV183735698
PJUB01000655
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
8699
8770
+
Trp
CCA
[ENA]
¢þ
>WENV183736395
PJUC01001755
[PJUC] soil metagenome; Soil enriched on filter paper
1798
1869
+
Trp
CCA
[ENA]
¢þ
>WENV183737022
PJUD01000243
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
32553
32482
-
Trp
CCA
[ENA]
¢þ
>WENV183737129
PJUD01000553
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1203
1274
+
Trp
CCA
[ENA]
¢þ
>WENV183737137
PJUD01000562
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1202
1273
+
Trp
CCA
[ENA]
¢þ
>WENV183738857
PJUE01000306
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
32553
32482
-
Trp
CCA
[ENA]
¢þ
>WENV183738967
PJUE01000656
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1203
1274
+
Trp
CCA
[ENA]
¢þ
>WENV183738985
PJUE01000740
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1202
1273
+
Trp
CCA
[ENA]
¢þ
>WENV183740857
PJUF01013598
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
973
1044
+
Trp
CCA
[ENA]
¢þ
>WENV183741059
PJUF01032794
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
701
772
+
Trp
CCA
[ENA]
¢þ
>WENV183741448
PJUG01000013
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
14201
14130
-
Trp
CCA
[ENA]
¢þ
>WENV183741943
PJUH01000012
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
14201
14130
-
Trp
CCA
[ENA]
¢þ
>WENV183742593
PJUI01000019
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
14201
14130
-
Trp
CCA
[ENA]
¢þ
>WENV183743323
PJUJ01000490
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
17054
16983
-
Trp
CCA
[ENA]
¢þ
>WENV183743345
PJUJ01000578
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
14201
14130
-
Trp
CCA
[ENA]
¢þ
>WENV183743848
PJUK01000011
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
14201
14130
-
Trp
CCA
[ENA]
¢þ
>C191157514
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
636947
637018
+
Trp
CCA
-
¡û
>C191222343
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
719865
719794
-
Trp
CCA
-
¡û
>W141701965
JMLD01000012
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
287476
287547
+
Trp
CCA
[ENA]
¡û
>W1910377926
FUKU01000026
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
285036
284965
-
Trp
CCA
[ENA]
¡û
>W1910664361
MCAQ01000004
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
26832
26761
-
Trp
CCA
[ENA]
¡û
>W1810002576
BEYR01000005
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
13079
13008
-
Trp
CCA
[ENA]
¡û
>W1810531945
QCXX01000007
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
27397
27326
-
Trp
CCA
[ENA]
¡û
>W1511108311
JJMU01000012
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
61979
61906
-
Trp
CCA
[ENA]
¡û
>C11117935
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
2642307
2642234
-
Trp
CCA
[Ensembl]
¡û
>W1511499231
JXAC01000010
Bacteroidota
Sphingobacterium sp. T2 [JXAC]
28388
28461
+
Trp
CCA
[ENA]
¡û
>W11140073
AEKX01000008
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
185793
185866
+
Trp
CCA
[ENA]
¡û
>W1511590249
LBGU01000023
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
13887
13816
-
Trp
CCA
[ENA]
¡û
>W1710603614
FUZF01000002
Bacteroidota
Sphingobacterium nematocida [FUZF]
270338
270409
+
Trp
CCA
[ENA]
¡û
>W1710608346
FXAU01000002
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
315801
315728
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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