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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780592 (103 seq.)
>W1710893061
LNEJ01000045
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0074134 [LNEJ]
127553
127480
-
Gly
CCC
[ENA]
¡û
>W1710893915
LNFF01000025
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0077554 [LNFF]
77054
77127
+
Gly
CCC
[ENA]
¡û
>W1710919647
LNXV01000003
Gammaproteobacteria
Legionella brunensis [LNXV]
254010
254083
+
Gly
CCC
[ENA]
¡û
>W1710919728
LNXX01000003
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
12866
12793
-
Gly
CCC
[ENA]
¡û
>W1710919896
LNYB01000014
Gammaproteobacteria
Legionella feeleii [LNYB]
64712
64785
+
Gly
CCC
[ENA]
¡û
>W1710920024
LNYE01000020
Gammaproteobacteria
Legionella gratiana [LNYE]
608279
608206
-
Gly
CCC
[ENA]
¡û
>W1710920080
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
1013880
1013953
+
Gly
CCC
[ENA]
¡û
>W1710920359
LNYM01000013
Gammaproteobacteria
Legionella micdadei [LNYM]
279565
279492
-
Gly
CCC
[ENA]
¡û
>W1710920683
LNYU01000035
Gammaproteobacteria
Legionella santicrucis [LNYU]
12622
12549
-
Gly
CCC
[ENA]
¡û
>W1710920734
LNYV01000036
Gammaproteobacteria
Legionella sainthelensi [LNYV]
141879
141806
-
Gly
CCC
[ENA]
¡û
>W131164837
ARBC01000031
Gammaproteobacteria
Lamprocystis purpurea DSM 4197 [ARBC]
3407
3480
+
Gly
CCC
[ENA]
¡û
>W1711424155
MIDV01000101
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_69_10 [MIDV]
22583
22510
-
Gly
CCC
[ENA]
¡û
>W1711424200
MIDW01000078
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYD1_FULL_69_11 [MIDW]
19640
19567
-
Gly
CCC
[ENA]
¡û
>W1711699673
MSLT01000006
Gammaproteobacteria
Thioflexithrix psekupsensis psekupsii [MSLT]
628178
628251
+
Gly
CCC
[ENA]
¡û
>C171106583
CP020412
Gammaproteobacteria
Legionella longbeachae FDAARGOS_201 [CP020412]
2837729
2837656
-
Gly
CCC
-
¡û
>C171110835
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
1881873
1881800
-
Gly
CCC
-
¡û
>C171110859
CP020615
Gammaproteobacteria
Legionella micdadei NZ2016 [CP020615]
1341541
1341614
+
Gly
CCC
-
¡û
>C171114423
CP020894
Gammaproteobacteria
Legionella longbeachae F1157CHC [CP020894]
2357739
2357812
+
Gly
CCC
-
¡û
>WENV180067424
MPLY02200539
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
828
755
-
Gly
CCC
[ENA]
¢þ
>WENV180068231
MPLZ02037809
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
16750
16677
-
Gly
CCC
[ENA]
¢þ
>WENV180075626
MPMA02222332
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
5117
5190
+
Gly
CCC
[ENA]
¢þ
>WENV180251966
OBEQ010407280
[OBEQ] groundwater metagenome; groundwater
14678
14751
+
Gly
CCC
[ENA]
¢þ
>WENV180254733
OBEQ010659461
[OBEQ] groundwater metagenome; groundwater
18812
18885
+
Gly
CCC
[ENA]
¢þ
>WENV180256460
OBEQ010821126
[OBEQ] groundwater metagenome; groundwater
150
77
-
Gly
CCC
[ENA]
¢þ
>WENV180282996
OBIC01054742
[OBIC] beach sand metagenome; beach sand
275
202
-
Gly
CCC
[ENA]
¢þ
>WENV180355648
OBNI01013917
[OBNI] sediment metagenome; sediment
170
243
+
Gly
CCC
[ENA]
¢þ
>WENV181173280
OEIV011345748
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
103
30
-
Gly
CCC
[ENA]
¢þ
>WENV181188453
OEOE01137218
[OEOE] activated sludge metagenome; Activated Sludge
148
75
-
Gly
CCC
[ENA]
¢þ
>W08000260
ABBZ01000530
Gammaproteobacteria
Beggiatoa sp. PS [ABBZ]
2979
2909
-
Gly
CCC
[ENA]
¡û
>WENV181415282
OGCL01007220
[OGCL] hot springs metagenome; Hot spring water
1542
1469
-
Gly
CCC
[ENA]
¢þ
>W141245603
CALJ01000144
Gammaproteobacteria
Legionella tunisiensis LegM [CALJ]
806
879
+
Gly
CCC
[ENA]
¡û
>W141254870
CBTK010000255
Gammaproteobacteria
Candidatus Contendobacter odensis odensis Run_B_J11 [CBTK]
33100
33027
-
Gly
CCC
[ENA]
¡û
>WENV183684996
ORMF010786505
[ORMF] groundwater metagenome; groundwater
233
160
-
Gly
CCC
[ENA]
¢þ
>WENV183728800
PJTQ01000454
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
4133
4060
-
Gly
CCC
[ENA]
¢þ
>WENV183797371
PVBE010328751
[PVBE] marine metagenome; water
17266
17193
-
Gly
CCC
[ENA]
¢þ
>WENV170012274
APMI01145079
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
511
438
-
Gly
CCC
[ENA]
¢þ
>WENV170397069
CEUD01021232
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
60
133
+
Gly
CCC
[ENA]
¢þ
>WENV170620293
FUWD013028965
[FUWD] metagenome; unknown
3753
3826
+
Gly
CCC
[ENA]
¢þ
>WENV170628424
FUWD013246633
[FUWD] metagenome; unknown
3753
3826
+
Gly
CCC
[ENA]
¢þ
>WENV170639674
JFJP01005809
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
703
776
+
Gly
CCC
[ENA]
¢þ
>WENV170646787
JQIA01003155
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
498
425
-
Gly
CCC
[ENA]
¢þ
>WENV170709691
LNFM01000593
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
64152
64079
-
Gly
CCC
[ENA]
¢þ
>WENV170709879
LNFM01000844
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
127570
127497
-
Gly
CCC
[ENA]
¢þ
>WENV170875547
MDTC01023603
[MDTC] marine metagenome; seawater
593
666
+
Gly
CCC
[ENA]
¢þ
>WENV170994035
MWWD01001225
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
2450
2523
+
Gly
CCC
[ENA]
¢þ
>C181000501
AP014836
Gammaproteobacteria
Candidatus Nitrosoglobus terrae TAO100 [AP014836]
896695
896768
+
Gly
CCC
-
¡û
>C181033881
CP018889
Gammaproteobacteria
Beggiatoa leptomitoformis D-401 [CP018889]
2228462
2228389
-
Gly
CCC
-
¡û
>C181044105
CP020370
Gammaproteobacteria
Candidatus Thiodictyon syntrophicum Cad16T [CP020370]
429769
429842
+
Gly
CCC
-
¡û
>C181117861
CP025491
Gammaproteobacteria
Legionella sainthelensi LA01-117 [CP025491]
727608
727681
+
Gly
CCC
-
¡û
>C191139401
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
844466
844393
-
Gly
CCC
-
¡û
>C191165706
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
838649
838576
-
Gly
CCC
-
¡û
>C191198971
LR134178
Gammaproteobacteria
Legionella sainthelensi NCTC12450 [LR134178]
3807157
3807230
+
Gly
CCC
-
¡û
>C191204109
LR134286
Gammaproteobacteria
Legionella oakridgensis NCTC11531 [LR134286]
3907201
3907272
+
Gly
CCC
-
¡û
>C191210108
LR134388
Gammaproteobacteria
Legionella sainthelensi NCTC11988 [LR134388]
3842059
3842132
+
Gly
CCC
-
¡û
>W141560445
JHXP01000009
Gammaproteobacteria
Legionella sainthelensi ATCC 35248 [JHXP]
129759
129686
-
Gly
CCC
[ENA]
¡û
>W141730031
JNIA01000015
Gammaproteobacteria
Legionella wadsworthii DSM 21896 = ATCC 33877 [JNIA]
123019
123092
+
Gly
CCC
[ENA]
¡û
>W1910728581
MGXO01000093
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_38_33 [MGXO]
5160
5233
+
Gly
CCC
[ENA]
¡û
>W1910728697
MGXS01000019
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_38_15 [MGXS]
2514
2441
-
Gly
CCC
[ENA]
¡û
>W1910729271
MGYI01000101
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_9 [MGYI]
2939
2866
-
Gly
CCC
[ENA]
¡û
>W1910729395
MGYM01000075
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_38_11 [MGYM]
2090
2163
+
Gly
CCC
[ENA]
¡û
>W1910729658
MGYV01000021
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_38_14 [MGYV]
11300
11373
+
Gly
CCC
[ENA]
¡û
>W1910821883
MWIN01000007
Gammaproteobacteria
Panacagrimonas perspica DSM 26377 [MWIN]
147331
147258
-
Gly
CCC
[ENA]
¡û
>W1911405237
NWQL01000004
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
230791
230864
+
Gly
CCC
[ENA]
¡û
>W1911405394
NWQP01000011
Gammaproteobacteria
Xanthomonadaceae bacterium NML71-0210 [NWQP]
27144
27217
+
Gly
CCC
[ENA]
¡û
>W1911405511
NWQR01000003
Gammaproteobacteria
Xanthomonadaceae bacterium NML08-0793 [NWQR]
169228
169155
-
Gly
CCC
[ENA]
¡û
>W1911405552
NWQS01000021
Gammaproteobacteria
Xanthomonadaceae bacterium NML120232 [NWQS]
31393
31320
-
Gly
CCC
[ENA]
¡û
>W1911405613
NWQT01000053
Gammaproteobacteria
Xanthomonadaceae bacterium NML07-0707 [NWQT]
35182
35109
-
Gly
CCC
[ENA]
¡û
>W1810236333
PPGH01000038
Gammaproteobacteria
Chromatium okenii LaCa [PPGH]
177780
177853
+
Gly
CCC
[ENA]
¡û
>C151002695
AP014633
Gammaproteobacteria
Thioploca ingrica [AP014633]
1778797
1778724
-
Gly
CCC
[Ensembl]
¡û
>C151103405
LN614827
Gammaproteobacteria
Legionella fallonii LLAP-10 [LN614827]
2310174
2310101
-
Gly
CCC
[Ensembl]
¡û
>C151103434
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
1494183
1494256
+
Gly
CCC
[Ensembl]
¡û
>C151103863
LN681225
Gammaproteobacteria
Legionella hackeliae ATCC 35250 [LN681225]
899671
899744
+
Gly
CCC
[Ensembl]
¡û
>W10107325
ACZG01000001
Gammaproteobacteria
Legionella longbeachae D-4968 [ACZG]
2197294
2197221
-
Gly
CCC
[ENA]
¡û
>C10108669
FN650140
Gammaproteobacteria
Legionella longbeachae NSW150 [FN650140]
3832008
3832081
+
Gly
CCC
[Ensembl]
¡û
>W11109614
ACZG01000001
Gammaproteobacteria
Legionella longbeachae D-4968 [ACZG]
2197294
2197221
-
Gly
CCC
[ENA]
¡û
>W11176175
AFWV01000015
Gammaproteobacteria
Thiocapsa marina 5811 [AFWV]
869
942
+
Gly
CCC
[ENA]
¡û
>W11178633
AGFC01000055
Gammaproteobacteria
Thiocystis violascens DSM 198 [AGFC]
842
915
+
Gly
CCC
[ENA]
¡û
>C121007008
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
4080061
4079988
-
Gly
CCC
[Ensembl]
¡û
>C161041417
CP012373
Gammaproteobacteria
Beggiatoa leptomitoformis D-402 [CP012373]
3490705
3490778
+
Gly
CCC
[Ensembl]
¡û
>W121036406
AHMA01000018
Gammaproteobacteria
Beggiatoa alba B18LD [AHMA]
389016
389089
+
Gly
CCC
[ENA]
¡û
>W1610027287
AVPT01000003
Gammaproteobacteria
Lysobacter arseniciresistens ZS79 [AVPT]
93986
94059
+
Gly
CCC
[ENA]
¡û
>W1610085783
CVPF01000148
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
8411
8484
+
Gly
CCC
[ENA]
¡û
>W1610547639
JUKH01000005
Gammaproteobacteria
Luteimonas abyssi [JUKH]
103961
104034
+
Gly
CCC
[ENA]
¡û
>W1610583901
LBHK01000029
Gammaproteobacteria
Legionella feeleii [LBHK]
19905
19832
-
Gly
CCC
[ENA]
¡û
>W1610584639
LCUB01000004
Gammaproteobacteria
Legionella micdadei [LCUB]
230510
230437
-
Gly
CCC
[ENA]
¡û
>W1610753327
LNEJ01000045
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0074134 [LNEJ]
127553
127480
-
Gly
CCC
[ENA]
¡û
>W1610754181
LNFF01000025
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0077554 [LNFF]
77054
77127
+
Gly
CCC
[ENA]
¡û
>W1610777545
LNXV01000003
Gammaproteobacteria
Legionella brunensis [LNXV]
254010
254083
+
Gly
CCC
[ENA]
¡û
>W1610777626
LNXX01000003
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
12866
12793
-
Gly
CCC
[ENA]
¡û
>W1610777794
LNYB01000014
Gammaproteobacteria
Legionella feeleii [LNYB]
64712
64785
+
Gly
CCC
[ENA]
¡û
>W1610777922
LNYE01000020
Gammaproteobacteria
Legionella gratiana [LNYE]
608279
608206
-
Gly
CCC
[ENA]
¡û
>W1610777978
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
1013880
1013953
+
Gly
CCC
[ENA]
¡û
>W1610778257
LNYM01000013
Gammaproteobacteria
Legionella micdadei [LNYM]
279565
279492
-
Gly
CCC
[ENA]
¡û
>W1610778581
LNYU01000035
Gammaproteobacteria
Legionella santicrucis [LNYU]
12622
12549
-
Gly
CCC
[ENA]
¡û
>W1610778632
LNYV01000036
Gammaproteobacteria
Legionella sainthelensi [LNYV]
141879
141806
-
Gly
CCC
[ENA]
¡û
>W1710023521
AVPT01000003
Gammaproteobacteria
Lysobacter arseniciresistens ZS79 [AVPT]
93986
94059
+
Gly
CCC
[ENA]
¡û
>W1710090372
CVPF01000148
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
8411
8484
+
Gly
CCC
[ENA]
¡û
>W1710507754
FMVN01000004
Gammaproteobacteria
Legionella micdadei [FMVN]
37126
37199
+
Gly
CCC
[ENA]
¡û
>W1710529483
FNNZ01000039
Gammaproteobacteria
Thiocapsa roseopersicina [FNNZ]
13047
13120
+
Gly
CCC
[ENA]
¡û
>W1710601742
FUXP01000012
Gammaproteobacteria
Lysobacter spongiicola DSM 21749 [FUXP]
17431
17358
-
Gly
CCC
[ENA]
¡û
>W1710650884
JUKH01000005
Gammaproteobacteria
Luteimonas abyssi [JUKH]
103961
104034
+
Gly
CCC
[ENA]
¡û
>W1710703049
LBHK01000029
Gammaproteobacteria
Legionella feeleii [LBHK]
19905
19832
-
Gly
CCC
[ENA]
¡û
>W1710703830
LCUB01000004
Gammaproteobacteria
Legionella micdadei [LCUB]
230510
230437
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK