This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780661 (108 seq.)
>W1711229338
LXYI01000040
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
39166
39093
-
Cys
GCA
[ENA]
¡û
>W1711229428
LXYK01000041
Alphaproteobacteria
Sulfitobacter pontiacus [LXYK]
22017
21944
-
Cys
GCA
[ENA]
¡û
>W131242035
BASI01000007
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
144121
144194
+
Cys
GCA
[ENA]
¡û
>W1711388519
MEHS01000003
Alphaproteobacteria
Rhodobaca barguzinensis [MEHS]
12317
12244
-
Cys
GCA
[ENA]
¡û
>W1711388562
MEHT01000007
Alphaproteobacteria
Roseinatronobacter thiooxidans [MEHT]
71442
71515
+
Cys
GCA
[ENA]
¡û
>W1711709200
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
3341883
3341956
+
Cys
GCA
[ENA]
¡û
>W1711709302
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
47099
47026
-
Cys
GCA
[ENA]
¡û
>C171105936
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
901591
901518
-
Cys
GCA
-
¡û
>w011981
AALZ01000001
Alphaproteobacteria
Sulfitobacter sp. NAS-14.1 [AALZ]
36496
36421
-
Cys
GCA
[ENA]
¡û
>w011777
AALV01000001
Alphaproteobacteria
Sulfitobacter sp. EE-36 [AALV]
92345
92270
-
Cys
GCA
[ENA]
¡û
>WENV180049576
MPLU02070291
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
8695
8768
+
Cys
GCA
[ENA]
¢þ
>WENV180071721
MPLZ02256419
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
2383
2456
+
Cys
GCA
[ENA]
¢þ
>WENV180104191
OAPB01116098
[OAPB] marine metagenome; Sterile flask
7
80
+
Cys
GCA
[ENA]
¢þ
>WENV180357282
OBNN01000667
[OBNN] marine metagenome; Coastal water
2688
2761
+
Cys
GCA
[ENA]
¢þ
>WENV180394373
OBPS01002611
[OBPS] marine metagenome; ENVO:00002010 seawater
2338
2411
+
Cys
GCA
[ENA]
¢þ
>WENV180395656
OBPT01066002
[OBPT] marine metagenome; ENVO:00002010 seawater
281
208
-
Cys
GCA
[ENA]
¢þ
>W08005748
ABID01000002
Alphaproteobacteria
Sulfitobacter indolifex HEL-45 [ABID]
138690
138620
-
Cys
GCA
[ENA]
¡û
>W08005902
ABIG01000002
Alphaproteobacteria
Roseobacter litoralis Och 149 [ABIG]
471103
471176
+
Cys
GCA
[ENA]
¡û
>W08011122
ABSH01000028
Alphaproteobacteria
Octadecabacter antarcticus 307 [ABSH]
196102
196175
+
Cys
GCA
[ENA]
¡û
>W08011246
ABSK01000040
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
36905
36835
-
Cys
GCA
[ENA]
¡û
>WENV181320991
OFKJ01007277
[OFKJ] marine metagenome; sea ice
413
486
+
Cys
GCA
[ENA]
¢þ
>WENV181324838
OFLH01015488
[OFLH] marine metagenome; sea ice
223
150
-
Cys
GCA
[ENA]
¢þ
>W141151722
AXBG01000026
Alphaproteobacteria
Sedimentitalea nanhaiensis DSM 24252 [AXBG]
57544
57617
+
Cys
GCA
[ENA]
¡û
>W141171301
AXZR01000002
Alphaproteobacteria
Sulfitobacter pontiacus 3SOLIMAR09 [AXZR]
125
198
+
Cys
GCA
[ENA]
¡û
>WENV182541766
OJAU01001247
[OJAU] seawater metagenome; Sea water
1154
1081
-
Cys
GCA
[ENA]
¢þ
>WENV182542924
OJAZ01007617
[OJAZ] seawater metagenome; Sea water
343
270
-
Cys
GCA
[ENA]
¢þ
>WENV182543914
OJBD01001040
[OJBD] seawater metagenome; Sea water
3204
3131
-
Cys
GCA
[ENA]
¢þ
>WENV182544095
OJBE01000324
[OJBE] seawater metagenome; Sea water
712
639
-
Cys
GCA
[ENA]
¢þ
>WENV182546103
OJBO01000926
[OJBO] seawater metagenome; Sea water
12049
12122
+
Cys
GCA
[ENA]
¢þ
>WENV182546784
OJBP01002968
[OJBP] seawater metagenome; Sea water
3020
3093
+
Cys
GCA
[ENA]
¢þ
>WENV182547140
OJBR01002138
[OJBR] seawater metagenome; Sea water
362
435
+
Cys
GCA
[ENA]
¢þ
>WENV182547775
OJBT01003675
[OJBT] seawater metagenome; Sea water
615
542
-
Cys
GCA
[ENA]
¢þ
>WENV182547984
OJBU01007904
[OJBU] seawater metagenome; Sea water
476
549
+
Cys
GCA
[ENA]
¢þ
>WENV182549137
OJBX01024890
[OJBX] seawater metagenome; Sea water
546
619
+
Cys
GCA
[ENA]
¢þ
>WENV182549506
OJBY01001506
[OJBY] seawater metagenome; Sea water
7469
7542
+
Cys
GCA
[ENA]
¢þ
>WENV182549924
OJBZ01000476
[OJBZ] seawater metagenome; Sea water
10131
10058
-
Cys
GCA
[ENA]
¢þ
>WENV182555469
OJDA01002617
[OJDA] seawater metagenome; Sea water
128
55
-
Cys
GCA
[ENA]
¢þ
>WENV182555769
OJDD01000502
[OJDD] seawater metagenome; Sea water
3556
3629
+
Cys
GCA
[ENA]
¢þ
>WENV182557591
OJDK01000520
[OJDK] seawater metagenome; Sea water
7068
6995
-
Cys
GCA
[ENA]
¢þ
>WENV182559794
OJDQ01005256
[OJDQ] seawater metagenome; Sea water
1433
1506
+
Cys
GCA
[ENA]
¢þ
>WENV182563906
OJED01002365
[OJED] seawater metagenome; Sea water
2538
2465
-
Cys
GCA
[ENA]
¢þ
>WENV182567038
OJEN01000709
[OJEN] seawater metagenome; Sea water
9790
9717
-
Cys
GCA
[ENA]
¢þ
>WENV182567540
OJEO01005632
[OJEO] seawater metagenome; Sea water
1576
1503
-
Cys
GCA
[ENA]
¢þ
>WENV182568898
OJEX01000689
[OJEX] seawater metagenome; Sea water
2765
2692
-
Cys
GCA
[ENA]
¢þ
>WENV182576312
OJFX01010049
[OJFX] seawater metagenome; Sea water
1661
1734
+
Cys
GCA
[ENA]
¢þ
>WENV182581392
OJGX01004601
[OJGX] seawater metagenome; Sea water
834
907
+
Cys
GCA
[ENA]
¢þ
>WENV182583708
OJHE01000416
[OJHE] seawater metagenome; Sea water
4165
4092
-
Cys
GCA
[ENA]
¢þ
>WENV182584754
OJHG01008384
[OJHG] seawater metagenome; Sea water
484
557
+
Cys
GCA
[ENA]
¢þ
>WENV182586048
OJHJ01000494
[OJHJ] seawater metagenome; Sea water
3927
3854
-
Cys
GCA
[ENA]
¢þ
>WENV182587432
OJHM01006054
[OJHM] seawater metagenome; Sea water
589
662
+
Cys
GCA
[ENA]
¢þ
>WENV182588036
OJHO01001295
[OJHO] seawater metagenome; Sea water
7786
7713
-
Cys
GCA
[ENA]
¢þ
>WENV182593086
OJIS01040091
[OJIS] seawater metagenome; Sea water
322
395
+
Cys
GCA
[ENA]
¢þ
>W141290283
JASG01000004
Alphaproteobacteria
Sulfitobacter guttiformis KCTC 32187 [JASG]
2212539
2212612
+
Cys
GCA
[ENA]
¡û
>WENV183057071
OLHK01001773
[OLHK] seawater metagenome; Sea water
1308
1381
+
Cys
GCA
[ENA]
¢þ
>WENV183057476
OLHL01003255
[OLHL] seawater metagenome; Sea water
137
64
-
Cys
GCA
[ENA]
¢þ
>WENV183059771
OLHV01002988
[OLHV] seawater metagenome; Sea water
2449
2376
-
Cys
GCA
[ENA]
¢þ
>WENV183617007
OOEE01027555
[OOEE] marine metagenome; sea ice
417
490
+
Cys
GCA
[ENA]
¢þ
>WENV183617627
OOEG01023505
[OOEG] marine metagenome; sea ice
342
415
+
Cys
GCA
[ENA]
¢þ
>WENV183628355
OOGN01016477
[OOGN] marine metagenome; sea ice
626
699
+
Cys
GCA
[ENA]
¢þ
>WENV183806975
PVBE011162046
[PVBE] marine metagenome; water
15025
15098
+
Cys
GCA
[ENA]
¢þ
>WENV170015296
AZIG01001124
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
639
712
+
Cys
GCA
[ENA]
¢þ
>WENV170015544
AZIH01004102
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
2156
2229
+
Cys
GCA
[ENA]
¢þ
>WENV170152337
CEOE01091684
[CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
735
662
-
Cys
GCA
[ENA]
¢þ
>WENV170155639
CEOG01079304
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
719
646
-
Cys
GCA
[ENA]
¢þ
>WENV170266148
CERE01044017
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
63
136
+
Cys
GCA
[ENA]
¢þ
>WENV170537282
CEWQ01051817
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
24
97
+
Cys
GCA
[ENA]
¢þ
>WENV170572143
FLOH01000559
[FLOH] marine metagenome; water
69680
69753
+
Cys
GCA
[ENA]
¢þ
>WENV170579062
FUFK010037888
[FUFK] metagenome; unknown
119785
119712
-
Cys
GCA
[ENA]
¢þ
>WENV170591535
FUFK010779221
[FUFK] metagenome; unknown
2159
2232
+
Cys
GCA
[ENA]
¢þ
>WENV170672542
LAZR01000280
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
2766
2693
-
Cys
GCA
[ENA]
¢þ
>WENV170683225
LFIK01007366
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
53
126
+
Cys
GCA
[ENA]
¢þ
>WENV170762699
LUMW01028063
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
292
365
+
Cys
GCA
[ENA]
¢þ
>WENV170782021
MAAC01006462
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
46
119
+
Cys
GCA
[ENA]
¢þ
>WENV170783033
MAAC01013213
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
9754
9681
-
Cys
GCA
[ENA]
¢þ
>WENV170818474
MDSX01072413
[MDSX] marine metagenome; seawater
615
688
+
Cys
GCA
[ENA]
¢þ
>C181108011
CP024899
Alphaproteobacteria
Rhodobaca barguzinensis alga05 [CP024899]
825170
825097
-
Cys
GCA
-
¡û
>C181123330
CP025803
Alphaproteobacteria
Sulfitobacter sp. SK011 [CP025803]
1334479
1334406
-
Cys
GCA
-
¡û
>C181123369
CP025804
Alphaproteobacteria
Sulfitobacter sp. SK012 [CP025804]
1495174
1495101
-
Cys
GCA
-
¡û
>C181123395
CP025808
Alphaproteobacteria
Sulfitobacter sp. SK025 [CP025808]
2617407
2617334
-
Cys
GCA
-
¡û
>C191182588
CP040753
Alphaproteobacteria
Sulfitobacter sp. BSw21498 [CP040753]
251139
251212
+
Cys
GCA
-
¡û
>W09112284
ABXS01000051
Alphaproteobacteria
Roseobacter sp. GAI101 [ABXS]
67376
67449
+
Cys
GCA
[ENA]
¡û
>W141807905
JPOY01000011
Alphaproteobacteria
Sulfitobacter sp. CB2047 [JPOY]
2082374
2082301
-
Cys
GCA
[ENA]
¡û
>W1910808407
MUAV01000022
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
2196
2123
-
Cys
GCA
[ENA]
¡û
>W1810424144
PYUG01000007
Alphaproteobacteria
Sulfitobacter sp. CB-A [PYUG]
2082374
2082301
-
Cys
GCA
[ENA]
¡û
>W1810486768
QAYC01000013
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
75883
75956
+
Cys
GCA
[ENA]
¡û
>W1810494699
QBFD01000001
Alphaproteobacteria
Sulfitobacter sp. DFL-14 [QBFD]
69369
69296
-
Cys
GCA
[ENA]
¡û
>W1810685909
QKZQ01000004
Alphaproteobacteria
Roseinatronobacter thiooxidans DSM 13087 [QKZQ]
198918
198845
-
Cys
GCA
[ENA]
¡û
>W1810722975
QNVX01000031
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
76219
76292
+
Cys
GCA
[ENA]
¡û
>W1810735778
QOLB01000032
Alphaproteobacteria
Candidatus Halocynthiibacter alkanivorans Bin25-node5 [QOLB]
121228
121155
-
Cys
GCA
[ENA]
¡û
>C11118668
CP002623
Alphaproteobacteria
Roseobacter litoralis Och 149 [CP002623]
2942316
2942389
+
Cys
GCA
[Ensembl]
¡û
>W1511479481
JWIE01000160
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [JWIE]
52811
52738
-
Cys
GCA
[ENA]
¡û
>C161001484
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
689258
689185
-
Cys
GCA
[Ensembl]
¡û
>C161071248
CP014327
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [CP014327]
2041528
2041455
-
Cys
GCA
[Ensembl]
¡û
>C161087737
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
4081989
4082062
+
Cys
GCA
-
¡û
>C161087786
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
4040138
4040211
+
Cys
GCA
[Ensembl]
¡û
>W1610092042
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
488358
488431
+
Cys
GCA
[ENA]
¡û
>C131005933
CP003740
Alphaproteobacteria
Octadecabacter antarcticus 307 [CP003740]
3416187
3416260
+
Cys
GCA
[Ensembl]
¡û
>C131005995
CP003742
Alphaproteobacteria
Octadecabacter arcticus 238 [CP003742]
992301
992228
-
Cys
GCA
[Ensembl]
¡û
>W1611013208
LXYI01000040
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
39166
39093
-
Cys
GCA
[ENA]
¡û
>W1611013298
LXYK01000041
Alphaproteobacteria
Sulfitobacter pontiacus [LXYK]
22017
21944
-
Cys
GCA
[ENA]
¡û
>WENV078386
AAGA01004587
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
259
334
+
Cys
GCA
[ENA]
>W1710095399
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
488358
488431
+
Cys
GCA
[ENA]
¡û
>W1710524966
FNJD01000014
Alphaproteobacteria
Sulfitobacter litoralis [FNJD]
91966
92039
+
Cys
GCA
[ENA]
¡û
>W1710528239
FNNB01000001
Alphaproteobacteria
Sulfitobacter pontiacus [FNNB]
434504
434431
-
Cys
GCA
[ENA]
¡û
>W1710531628
FNPR01000003
Alphaproteobacteria
Lentibacter algarum [FNPR]
35773
35846
+
Cys
GCA
[ENA]
¡û
>W1710543726
FOAG01000001
Alphaproteobacteria
Roseovarius azorensis [FOAG]
9523
9450
-
Cys
GCA
[ENA]
¡û
>W1710577518
FPAW01000012
Alphaproteobacteria
Sedimentitalea nanhaiensis [FPAW]
73177
73104
-
Cys
GCA
[ENA]
¡û
>W1710583497
FQUV01000003
Alphaproteobacteria
Litoreibacter ascidiaceicola [FQUV]
457840
457767
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK