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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780703 (32 seq.)
>W1711509661
MKZW02000001
Gammaproteobacteria
[Kluyvera] intestini [MKZW]
1202049
1202122
+
Gln
CTG
[ENA]
¡û
>W1711795418
MWPR01000014
Gammaproteobacteria
Kluyvera intermedia [MWPR]
59662
59735
+
Gln
CTG
[ENA]
¡û
>WENV180187176
OAWV01031585
[OAWV] human gut metagenome; faeces
315
388
+
Gln
CTG
[ENA]
¢þ
>WENV180504644
OCAN01019368
[OCAN] human gut metagenome; faeces
244
317
+
Gln
CTG
[ENA]
¢þ
>WENV181798943
OGRX01003625
[OGRX] human gut metagenome; fecal sample 2 from infant 8
557
484
-
Gln
CTG
[ENA]
¢þ
>WENV181801761
OGSC01000043
[OGSC] human gut metagenome; fecal sample 8 from infant 5
381
454
+
Gln
CTG
[ENA]
¢þ
>WENV181806504
OGSL01000026
[OGSL] human gut metagenome; fecal sample 6 from infant 5
130735
130662
-
Gln
CTG
[ENA]
¢þ
>WENV181814211
OGTF01000521
[OGTF] human gut metagenome; fecal sample 5 from infant 5
360
433
+
Gln
CTG
[ENA]
¢þ
>WENV181837135
OGVK01003386
[OGVK] freshwater metagenome; freshwater
1020
947
-
Gln
CTG
[ENA]
¢þ
>WENV182408525
OIFF01000024
[OIFF] human gut metagenome; stool
113242
113169
-
Gln
CTG
[ENA]
¢þ
>WENV182412071
OIFS01000022
[OIFS] human gut metagenome; stool
113242
113169
-
Gln
CTG
[ENA]
¢þ
>WENV182413029
OIFX01000033
[OIFX] human gut metagenome; stool
59773
59846
+
Gln
CTG
[ENA]
¢þ
>WENV182863931
OKPX01000050
[OKPX] human gut metagenome; human gut
27489
27416
-
Gln
CTG
[ENA]
¢þ
>WENV182951253
OKVU01000048
[OKVU] human gut metagenome; human gut
79379
79306
-
Gln
CTG
[ENA]
¢þ
>WENV182953120
OKVX01005983
[OKVX] human gut metagenome; human gut
938
1011
+
Gln
CTG
[ENA]
¢þ
>WENV182953300
OKVY01000053
[OKVY] human gut metagenome; human gut
383
456
+
Gln
CTG
[ENA]
¢þ
>WENV182966138
OKWV01000017
[OKWV] human gut metagenome; stool
68259
68332
+
Gln
CTG
[ENA]
¢þ
>WENV183065436
OLIJ01000078
[OLIJ] metagenome; faeces
831
904
+
Gln
CTG
[ENA]
¢þ
>WENV170001353
AGFS01013296
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
163
90
-
Gln
CTG
[ENA]
¢þ
>C181128739
CP026192
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH2 [CP026192]
5461913
5461986
+
Gln
CTG
-
¡û
>C181128807
CP026193
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH1 [CP026193]
2763121
2763194
+
Gln
CTG
-
¡û
>C181128944
CP026197
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH3 [CP026197]
2648406
2648333
-
Gln
CTG
-
¡û
>C181147787
CP027225
Gammaproteobacteria
Phytobacter sp. SCO41 [CP027225]
4005655
4005728
+
Gln
CTG
-
¡û
>C191004893
AP018756
Gammaproteobacteria
Phytobacter sp. MRY16-398 [AP018756]
4222018
4222091
+
Gln
CTG
-
¡û
>W1810423642
PYTY01000016
Gammaproteobacteria
Kluyvera sp. Nf5 [PYTY]
62722
62649
-
Gln
CTG
[ENA]
¡û
>W1810658497
QJJI01000010
Gammaproteobacteria
Grimontella sp. AG753 [QJJI]
118199
118126
-
Gln
CTG
[ENA]
¡û
>W1810785323
QRBM01000005
Gammaproteobacteria
Escherichia coli 1-RC-17-04352 [QRBM]
105023
104950
-
Gln
CTG
[ENA]
¡û
>C151085198
CP011602
Gammaproteobacteria
Phytobacter ursingii CAV1151 [CP011602]
3029929
3030002
+
Gln
CTG
[Ensembl]
¡û
>WENV11101425
AGFS01013296
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
163
90
-
Gln
CTG
[ENA]
¡û
>W1511499416
JXAF01000045
Gammaproteobacteria
Enterobacter sp. Bisph2 [JXAF]
363
436
+
Gln
CTG
[ENA]
¡û
>W1710559983
FONB01000002
Gammaproteobacteria
Phytobacter palmae S29 [FONB]
67886
67959
+
Gln
CTG
[ENA]
¡û
>W1710604818
FVZI01000014
Gammaproteobacteria
Enterobacter sp. NFR05 [FVZI]
68298
68371
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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