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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780766 (90 seq.)
>W131063616
ANKZ01000001
Gammaproteobacteria
Spiribacter salinus M19-40 [ANKZ]
1177350
1177277
-
Gln
CTG
[ENA]
¡û
>W131155812
AQOW01000032
Gammaproteobacteria
Thioalkalivibrio sp. HL-Eb18 [AQOW]
87438
87511
+
Gln
CTG
[ENA]
¡û
>W131156021
AQPB01000025
Gammaproteobacteria
Thioalkalivibrio sp. ALE6 [AQPB]
194
121
-
Gln
CTG
[ENA]
¡û
>W131161345
AQXP01000043
Gammaproteobacteria
Thioalkalivibrio sp. ALJ11 [AQXP]
247
174
-
Gln
CTG
[ENA]
¡û
>W131161696
AQXY01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALE14 [AQXY]
27264
27337
+
Gln
CTG
[ENA]
¡û
>W131161959
AQYE01000008
Gammaproteobacteria
Thioalkalivibrio sp. ALJ9 [AQYE]
223673
223746
+
Gln
CTG
[ENA]
¡û
>W131163160
AQZO01000005
Gammaproteobacteria
Thioalkalivibrio thiocyanodenitrificans ARhD 1 [AQZO]
2571947
2572020
+
Gln
CTG
[ENA]
¡û
>W1711138730
LVEG02000011
Gammaproteobacteria
Halofilum ochraceum XJ16 [LVEG]
185598
185671
+
Gln
CTG
[ENA]
¡û
>W131170354
ARFM01000003
Gammaproteobacteria
Thioalkalivibrio versutus AL2 [ARFM]
384413
384340
-
Gln
CTG
[ENA]
¡û
>W131173717
ARHW01000013
Gammaproteobacteria
Thioalkalivibrio sp. ALJ3 [ARHW]
91961
91888
-
Gln
CTG
[ENA]
¡û
>W131173747
ARHX01000010
Gammaproteobacteria
Thioalkalivibrio sp. ALJ4 [ARHX]
117548
117621
+
Gln
CTG
[ENA]
¡û
>W131173793
ARHY01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALJ5 [ARHY]
383919
383846
-
Gln
CTG
[ENA]
¡û
>W131173825
ARHZ01000008
Gammaproteobacteria
Thioalkalivibrio sp. ARh3 [ARHZ]
66755
66828
+
Gln
CTG
[ENA]
¡û
>W131173883
ARIA01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALE25 [ARIA]
75446
75519
+
Gln
CTG
[ENA]
¡û
>W131173937
ARIB01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALJ10 [ARIB]
91988
91915
-
Gln
CTG
[ENA]
¡û
>W131173975
ARIC01000059
Gammaproteobacteria
Thioalkalivibrio sp. ALgr3 [ARIC]
186081
186008
-
Gln
CTG
[ENA]
¡û
>W131174104
ARIF01000012
Gammaproteobacteria
Thioalkalivibrio sp. ALJ8 [ARIF]
306648
306575
-
Gln
CTG
[ENA]
¡û
>W131174152
ARIG01000015
Gammaproteobacteria
Thioalkalivibrio sp. ALE31 [ARIG]
10767
10694
-
Gln
CTG
[ENA]
¡û
>W131174188
ARIH01000021
Gammaproteobacteria
Thioalkalivibrio sp. ALE28 [ARIH]
50908
50981
+
Gln
CTG
[ENA]
¡û
>W131174228
ARII01000015
Gammaproteobacteria
Thioalkalivibrio sp. ALE9 [ARII]
28061
27988
-
Gln
CTG
[ENA]
¡û
>W131174265
ARIJ01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALE30 [ARIJ]
11539
11612
+
Gln
CTG
[ENA]
¡û
>W131174312
ARIK01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALE27 [ARIK]
28323
28250
-
Gln
CTG
[ENA]
¡û
>W131175124
ARIZ01000026
Gammaproteobacteria
Thioalkalivibrio sp. ALJ24 [ARIZ]
46294
46367
+
Gln
CTG
[ENA]
¡û
>W131175238
ARJC01000016
Gammaproteobacteria
Thioalkalivibrio sp. AKL11 [ARJC]
47810
47737
-
Gln
CTG
[ENA]
¡û
>W131175354
ARJE01000020
Gammaproteobacteria
Thioalkalivibrio sp. AKL17 [ARJE]
269884
269811
-
Gln
CTG
[ENA]
¡û
>W131175489
ARJH01000057
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus ALJ17 [ARJH]
674
601
-
Gln
CTG
[ENA]
¡û
>W131176320
ARJY01000014
Gammaproteobacteria
Thioalkalivibrio sp. ARh4 [ARJY]
267025
266952
-
Gln
CTG
[ENA]
¡û
>W131176363
ARJZ01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALgr1 [ARJZ]
591426
591353
-
Gln
CTG
[ENA]
¡û
>W131176413
ARKA01000010
Gammaproteobacteria
Thioalkalivibrio sp. ALJ12 [ARKA]
1047918
1047991
+
Gln
CTG
[ENA]
¡û
>W131176463
ARKB01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALJ2 [ARKB]
771863
771936
+
Gln
CTG
[ENA]
¡û
>W131177039
ARKM01000072
Gammaproteobacteria
Thioalkalivibrio sp. ALE23 [ARKM]
211622
211549
-
Gln
CTG
[ENA]
¡û
>W131177061
ARKN01000004
Gammaproteobacteria
Thioalkalivibrio sp. AL5 [ARKN]
383919
383846
-
Gln
CTG
[ENA]
¡û
>W131177096
ARKO01000001
Gammaproteobacteria
Thioalkalivibrio sp. ALJ20 [ARKO]
989140
989213
+
Gln
CTG
[ENA]
¡û
>W131177175
ARKP01000002
Gammaproteobacteria
Thioalkalivibrio sp. ALJ21 [ARKP]
88345
88272
-
Gln
CTG
[ENA]
¡û
>W131178035
ARLG01000015
Gammaproteobacteria
Thioalkalivibrio sp. ALE12 [ARLG]
49490
49563
+
Gln
CTG
[ENA]
¡û
>W131178295
ARLL01000059
Gammaproteobacteria
Thioalkalivibrio sp. ALE11 [ARLL]
207980
207907
-
Gln
CTG
[ENA]
¡û
>W131178357
ARLN01000005
Gammaproteobacteria
Thioalkalivibrio sp. ALD1 [ARLN]
117498
117571
+
Gln
CTG
[ENA]
¡û
>W131178513
ARLQ01000032
Gammaproteobacteria
Thioalkalivibrio sp. ALE16 [ARLQ]
49369
49442
+
Gln
CTG
[ENA]
¡û
>W131178593
ARLR01000005
Gammaproteobacteria
Thioalkalivibrio sp. AL21 [ARLR]
108331
108404
+
Gln
CTG
[ENA]
¡û
>W131178714
ARLT01000024
Gammaproteobacteria
Thioalkalivibrio sp. ALE10 [ARLT]
619710
619783
+
Gln
CTG
[ENA]
¡û
>W131178755
ARLU01000034
Gammaproteobacteria
Thioalkalivibrio sp. ALE20 [ARLU]
467384
467311
-
Gln
CTG
[ENA]
¡û
>W131178785
ARLV01000012
Gammaproteobacteria
Thioalkalivibrio sp. ALRh [ARLV]
84955
84882
-
Gln
CTG
[ENA]
¡û
>W131178840
ARLW01000020
Gammaproteobacteria
Thioalkalivibrio sp. ALE22 [ARLW]
140092
140019
-
Gln
CTG
[ENA]
¡û
>W131178884
ARLX01000025
Gammaproteobacteria
Thioalkalivibrio sp. ALE18 [ARLX]
208636
208709
+
Gln
CTG
[ENA]
¡û
>W131178914
ARLY01000015
Gammaproteobacteria
Thioalkalivibrio sp. ALgr5 [ARLY]
41398
41325
-
Gln
CTG
[ENA]
¡û
>W131179660
ARMO01000013
Gammaproteobacteria
Thioalkalivibrio sp. ARh5 [ARMO]
608629
608556
-
Gln
CTG
[ENA]
¡û
>W131179703
ARMP01000023
Gammaproteobacteria
Thioalkalivibrio sp. ALJT [ARMP]
322184
322111
-
Gln
CTG
[ENA]
¡û
>W131180029
ARMV01000027
Gammaproteobacteria
Thioalkalivibrio sp. ALSr1 [ARMV]
130134
130207
+
Gln
CTG
[ENA]
¡û
>W131182490
ARQK01000054
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh2 [ARQK]
2043
2116
+
Gln
CTG
[ENA]
¡û
>W131185584
ARTU01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALJ15 [ARTU]
531373
531300
-
Gln
CTG
[ENA]
¡û
>W1711256737
LYSX01000003
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
1617093
1617020
-
Gln
CTG
[ENA]
¡û
>W1711256801
LYSX01000018
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
25503
25430
-
Gln
CTG
[ENA]
¡û
>W131214702
ATUK01000012
Gammaproteobacteria
Thioalkalivibrio sp. AKL19 [ATUK]
304044
303971
-
Gln
CTG
[ENA]
¡û
>W131214741
ATUL01000003
Gammaproteobacteria
Thioalkalivibrio sp. ALR17-21 [ATUL]
151845
151918
+
Gln
CTG
[ENA]
¡û
>W131221238
AUAG01000031
Gammaproteobacteria
Thioalkalivibrio sp. ALE19 [AUAG]
153
80
-
Gln
CTG
[ENA]
¡û
>W131225666
AUDT01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALE17 [AUDT]
121788
121861
+
Gln
CTG
[ENA]
¡û
>W1711767340
MUZR01000021
Gammaproteobacteria
Thioalkalivibrio halophilus [MUZR]
26077
26150
+
Gln
CTG
[ENA]
¡û
>W1711767956
MVBK01000008
Gammaproteobacteria
Thioalkalivibrio denitrificans [MVBK]
818
745
-
Gln
CTG
[ENA]
¡û
>C000601
CP000453
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [CP000453]
2543801
2543728
-
Gln
CTG
[Ensembl]
¡û
>W141022625
AJUE01000026
Gammaproteobacteria
Ectothiorhodospira haloalkaliphila ATCC 51935 [AJUE]
208692
208765
+
Gln
CTG
[ENA]
¡û
>WENV180297277
OBJA01019334
[OBJA] soil metagenome; sediment, water from around vicinity
210
137
-
Gln
CTG
[ENA]
¢þ
>WENV180310073
OBJS01191143
[OBJS] beach sand metagenome; beach sand
122
195
+
Gln
CTG
[ENA]
¢þ
>WENV180343135
OBLK01000014
[OBLK] soil metagenome; Clay
86307
86234
-
Gln
CTG
[ENA]
¢þ
>WENV181291723
OFHC01007893
[OFHC] soil metagenome; Clay
185
112
-
Gln
CTG
[ENA]
¢þ
>WENV181295121
OFHI01000581
[OFHI] soil metagenome; Clay
3978
3905
-
Gln
CTG
[ENA]
¢þ
>C08000374
CP000453
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [CP000453]
2543801
2543731
-
Gln
CTG
[Ensembl]
¡û
>WENV170682470
LFIK01000159
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
32499
32572
+
Gln
CTG
[ENA]
¢þ
>WENV170682966
LFIK01003024
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
7792
7719
-
Gln
CTG
[ENA]
¢þ
>WENV170683622
LFIK01017062
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
4803
4876
+
Gln
CTG
[ENA]
¢þ
>WENV170703961
LKMJ01019721
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4465
4392
-
Gln
CTG
[ENA]
¢þ
>W09104173
AALK01000011
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [AALK]
54782
54709
-
Gln
CTG
[ENA]
¡û
>W09113270
ABYM01000018
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGR7 [ABYM]
63437
63510
+
Gln
CTG
[ENA]
¡û
>W09125858
ACIU01000002
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [ACIU] K90mix [ACIU]
335597
335524
-
Gln
CTG
[ENA]
¡û
>C09110612
CP001339
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGr7 HL-EbGR7 [CP001339]
2928202
2928129
-
Gln
CTG
[Ensembl]
¡û
>W1910896616
NFZV01000001
Gammaproteobacteria
Alkalilimnicola ehrlichii AK92 [NFZV]
189928
190001
+
Gln
CTG
[ENA]
¡û
>W1910896664
NFZW01000001
Gammaproteobacteria
Alkalilimnicola ehrlichii AK93 [NFZW]
288309
288236
-
Gln
CTG
[ENA]
¡û
>W1810676482
QKMA01000012
Gammaproteobacteria
Thioalkalivibrio sp. ALE21 [QKMA]
48509
48582
+
Gln
CTG
[ENA]
¡û
>C151016157
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
824332
824405
+
Gln
CTG
[Ensembl]
¡û
>C10113282
CP001905
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [CP001905]
574049
574122
+
Gln
CTG
[Ensembl]
¡û
>W11177715
AGBG01000004
Gammaproteobacteria
Ectothiorhodospira sp. PHS-1 [AGBG]
65999
65926
-
Gln
CTG
[ENA]
¡û
>W11178571
AGFB01000001
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh 4 [AGFB]
60884
60811
-
Gln
CTG
[ENA]
¡û
>C161005748
CP007268
Gammaproteobacteria
Ectothiorhodospira haloalkaliphila A [CP007268]
333816
333889
+
Gln
CTG
-
¡û
>C161038423
CP011994
Gammaproteobacteria
Ectothiorhodospira sp. BSL-9 [CP011994]
1955014
1955087
+
Gln
CTG
[Ensembl]
¡û
>C131010936
CP003989
Gammaproteobacteria
Thioalkalivibrio nitratireducens DSM 14787 [CP003989]
3301851
3301778
-
Gln
CTG
[Ensembl]
¡û
>C131016210
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
362370
362443
+
Gln
CTG
[Ensembl]
¡û
>W1611019762
LYSX01000003
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
1617093
1617020
-
Gln
CTG
[ENA]
¡û
>W1611019826
LYSX01000018
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
25503
25430
-
Gln
CTG
[ENA]
¡û
>W1710543513
FOAA01000007
Gammaproteobacteria
Ectothiorhodospira marina [FOAA]
77321
77394
+
Gln
CTG
[ENA]
¡û
>W1710549088
FOEG01000004
Gammaproteobacteria
Aquisalimonas asiatica [FOEG]
345703
345776
+
Gln
CTG
[ENA]
¡û
>W1710550770
FOFO01000002
Gammaproteobacteria
Ectothiorhodospira magna [FOFO]
42199
42126
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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