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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780865 (39 seq.)
>W1710934451
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
328529
328602
+
Gly
TCC
[ENA]
¡û
>W1711147336
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
42157
42230
+
Gly
TCC
[ENA]
¡û
>W1711149044
LVLD01000001
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
42157
42230
+
Gly
TCC
[ENA]
¡û
>W1711149081
LVLE01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
42157
42230
+
Gly
TCC
[ENA]
¡û
>W1711149117
LVLF01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
72145
72218
+
Gly
TCC
[ENA]
¡û
>W1711149155
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
42157
42230
+
Gly
TCC
[ENA]
¡û
>W1711272413
LZFI01000001
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
80738
80811
+
Gly
TCC
[ENA]
¡û
>W1711282006
LZMQ01000004
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
20926
20853
-
Gly
TCC
[ENA]
¡û
>W1711282016
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
25382
25455
+
Gly
TCC
[ENA]
¡û
>W131220801
ATZV01000036
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
867
940
+
Gly
TCC
[ENA]
¡û
>W1711625793
MPIY01000017
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
204153
204226
+
Gly
TCC
[ENA]
¡û
>W1711932790
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
403576
403649
+
Gly
TCC
[ENA]
¡û
>W1712077011
NGUO01000002
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
277127
277200
+
Gly
TCC
[ENA]
¡û
>W1712077058
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
629501
629574
+
Gly
TCC
[ENA]
¡û
>C171035100
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
81624
81697
+
Gly
TCC
-
¡û
>C171035139
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
81624
81697
+
Gly
TCC
-
¡û
>C171035177
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
42157
42230
+
Gly
TCC
-
¡û
>C017369
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
42157
42230
+
Gly
TCC
[Ensembl]
¡û
>WENV180111171
OAPN01036101
[OAPN] marine metagenome; 2011
77
4
-
Gly
TCC
[ENA]
¢þ
>WENV016920
AACY020472296
Marine microbial communities from Global Ocean Sampling (GOS)
3262
3335
+
Gly
TCC
[ENA]
>C08007607
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
39280
39353
+
Gly
TCC
[Ensembl]
¡û
>WENV170600061
FUWD010104591
[FUWD] metagenome; unknown
208
135
-
Gly
TCC
[ENA]
¢þ
>WENV170617379
FUWD012923934
[FUWD] metagenome; unknown
812
885
+
Gly
TCC
[ENA]
¢þ
>C181187671
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
38119
38192
+
Gly
TCC
-
¡û
>C181218885
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
1837159
1837232
+
Gly
TCC
-
¡û
>C181218918
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
1590952
1591025
+
Gly
TCC
-
¡û
>C181218989
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
1532458
1532531
+
Gly
TCC
-
¡û
>C181219041
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
192
119
-
Gly
TCC
-
¡û
>C181219048
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
684049
684122
+
Gly
TCC
-
¡û
>C181219094
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
1556486
1556559
+
Gly
TCC
-
¡û
>W09106298
AAUC01000015
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
828
755
-
Gly
TCC
[ENA]
¡û
>C141003781
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
38269
38342
+
Gly
TCC
[Ensembl]
¡û
>W1911490747
OANS01000003
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
92843
92916
+
Gly
TCC
[ENA]
¡û
>W1810102003
PGTX01000002
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
336029
335956
-
Gly
TCC
[ENA]
¡û
>W1810699137
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
412745
412818
+
Gly
TCC
[ENA]
¡û
>W1810699175
QMCH01000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
274781
274854
+
Gly
TCC
[ENA]
¡û
>C151025635
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
37568
37641
+
Gly
TCC
[Ensembl]
¡û
>C161092367
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
39158
39231
+
Gly
TCC
[Ensembl]
¡û
>W1610791982
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
328529
328602
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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