This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780866 (62 seq.)
>W1710934463
LOJI01000022
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
58751
58824
+
Cys
GCA
[ENA]
¡û
>W1710934520
LOJJ01000018
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
313952
314025
+
Cys
GCA
[ENA]
¡û
>W1711147341
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
408047
408120
+
Cys
GCA
[ENA]
¡û
>W1711149050
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
50083
50156
+
Cys
GCA
[ENA]
¡û
>W1711149087
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
81467
81540
+
Cys
GCA
[ENA]
¡û
>W1711149122
LVLF01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
462271
462344
+
Cys
GCA
[ENA]
¡û
>W1711149160
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
437274
437347
+
Cys
GCA
[ENA]
¡û
>W1711272438
LZFI01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
221504
221431
-
Cys
GCA
[ENA]
¡û
>W1711281988
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
919027
919100
+
Cys
GCA
[ENA]
¡û
>W1711282021
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
387288
387361
+
Cys
GCA
[ENA]
¡û
>W131220817
ATZV01000061
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
83187
83260
+
Cys
GCA
[ENA]
¡û
>W1711301907
MAIK01000104
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
1424
1497
+
Cys
GCA
[ENA]
¡û
>W1711421586
MHZG01000001
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
189452
189379
-
Cys
GCA
[ENA]
¡û
>W1711625763
MPIY01000001
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
133836
133909
+
Cys
GCA
[ENA]
¡û
>W1711932798
NAIA01000002
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
196965
197038
+
Cys
GCA
[ENA]
¡û
>W1712077043
NGUO01000019
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
8143
8070
-
Cys
GCA
[ENA]
¡û
>W1712077046
NGUP01000001
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
107787
107860
+
Cys
GCA
[ENA]
¡û
>C171035182
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
420278
420351
+
Cys
GCA
-
¡û
>C017374
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
408047
408120
+
Cys
GCA
[Ensembl]
¡û
>WENV180391132
OBPM01016605
[OBPM] marine metagenome; ENVO:00002010
422
349
-
Cys
GCA
[ENA]
¢þ
>WENV181368193
OFQK01002145
[OFQK] freshwater metagenome; Freshwater Lake
684
611
-
Cys
GCA
[ENA]
¢þ
>WENV181369238
OFQP01000006
[OFQP] freshwater metagenome; Freshwater Lake
56534
56607
+
Cys
GCA
[ENA]
¢þ
>WENV181369835
OFQR01000560
[OFQR] freshwater metagenome; Freshwater Lake
2972
3045
+
Cys
GCA
[ENA]
¢þ
>WENV181370128
OFQS01000025
[OFQS] freshwater metagenome; Freshwater Lake
489
416
-
Cys
GCA
[ENA]
¢þ
>WENV181370525
OFQT01000079
[OFQT] freshwater metagenome; Freshwater Lake
10273
10346
+
Cys
GCA
[ENA]
¢þ
>WENV181395639
OFSB01000105
[OFSB] freshwater metagenome; Freshwater Lake
13892
13965
+
Cys
GCA
[ENA]
¢þ
>WENV181841883
OGVS01011955
[OGVS] freshwater metagenome; freshwater
440
513
+
Cys
GCA
[ENA]
¢þ
>WENV181844248
OGVV01027635
[OGVV] freshwater metagenome; freshwater
103
31
-
Cys
GCA
[ENA]
¢þ
>WENV181856103
OGWM01019371
[OGWM] freshwater metagenome; freshwater
532
459
-
Cys
GCA
[ENA]
¢þ
>WENV182866216
OKRQ01036180
[OKRQ] freshwater metagenome; freshwater
373
446
+
Cys
GCA
[ENA]
¢þ
>C08007612
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
378956
379029
+
Cys
GCA
[Ensembl]
¡û
>WENV170599115
FUWD010063368
[FUWD] metagenome; unknown
496
423
-
Cys
GCA
[ENA]
¢þ
>WENV170619739
FUWD013020327
[FUWD] metagenome; unknown
1048
975
-
Cys
GCA
[ENA]
¢þ
>WENV170624446
FUWD013181810
[FUWD] metagenome; unknown
918
845
-
Cys
GCA
[ENA]
¢þ
>WENV170624448
FUWD013181811
[FUWD] metagenome; unknown
83
10
-
Cys
GCA
[ENA]
¢þ
>WENV170627860
FUWD013238633
[FUWD] metagenome; unknown
1048
975
-
Cys
GCA
[ENA]
¢þ
>WENV170632734
FUWD013386698
[FUWD] metagenome; unknown
918
845
-
Cys
GCA
[ENA]
¢þ
>WENV170632736
FUWD013386699
[FUWD] metagenome; unknown
83
10
-
Cys
GCA
[ENA]
¢þ
>C181078395
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
1412301
1412228
-
Cys
GCA
-
¡û
>C181187685
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1146742
1146669
-
Cys
GCA
-
¡û
>C181218893
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
1260823
1260750
-
Cys
GCA
-
¡û
>C181218927
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
968838
968765
-
Cys
GCA
-
¡û
>C181218936
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
361747
361820
+
Cys
GCA
-
¡û
>C181218971
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
335330
335403
+
Cys
GCA
-
¡û
>C181219027
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
1571290
1571217
-
Cys
GCA
-
¡û
>C181219053
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1047528
1047601
+
Cys
GCA
-
¡û
>C181219080
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
96208
96281
+
Cys
GCA
-
¡û
>W09106289
AAUC01000005
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
4723
4650
-
Cys
GCA
[ENA]
¡û
>W09107507
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
1214593
1214520
-
Cys
GCA
[ENA]
¡û
>C141003809
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
1383541
1383468
-
Cys
GCA
[Ensembl]
¡û
>W1911490729
OANS01000001
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
504623
504696
+
Cys
GCA
[ENA]
¡û
>W1810101995
PGTX01000001
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
555092
555019
-
Cys
GCA
[ENA]
¡û
>W1810699167
QMCG01000003
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
115660
115587
-
Cys
GCA
[ENA]
¡û
>W1810699184
QMCH01000002
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
166753
166826
+
Cys
GCA
[ENA]
¡û
>C151025664
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
1469441
1469368
-
Cys
GCA
[Ensembl]
¡û
>WENV042148
AACY022215032
Marine microbial communities from Global Ocean Sampling (GOS)
174
247
+
Cys
GCA
[ENA]
>C161092372
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
391128
391201
+
Cys
GCA
[Ensembl]
¡û
>WENV057970
AACY023313154
Marine microbial communities from Global Ocean Sampling (GOS)
84
11
-
Cys
GCA
[ENA]
>WENV074961
AACY024006380
Marine microbial communities from Global Ocean Sampling (GOS)
210
135
-
Cys
GCA
[ENA]
>W1610791994
LOJI01000022
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
58751
58824
+
Cys
GCA
[ENA]
¡û
>W1610792051
LOJJ01000018
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
313952
314025
+
Cys
GCA
[ENA]
¡û
>W1611052747
MAIK01000104
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
1424
1497
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK