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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780884 (106 seq.)
>W1710785281
LJHS01000020
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
30285
30212
-
Gln
CTG
[ENA]
¡û
>W1710785657
LJIB01000007
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
117571
117498
-
Gln
CTG
[ENA]
¡û
>W1710861497
LMDR01000001
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
976721
976794
+
Gln
CTG
[ENA]
¡û
>W1710868548
LMJE01000001
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
976720
976793
+
Gln
CTG
[ENA]
¡û
>W1710873028
LMMM01000001
Alphaproteobacteria
Rhizobium sp. Leaf262 [LMMM]
362878
362805
-
Gln
CTG
[ENA]
¡û
>W1710874798
LMNX01000001
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
717730
717803
+
Gln
CTG
[ENA]
¡û
>W1710874917
LMNZ01000009
Alphaproteobacteria
Rhizobium sp. Leaf311 [LMNZ]
43686
43613
-
Gln
CTG
[ENA]
¡û
>W1710875225
LMOF01000006
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
650437
650364
-
Gln
CTG
[ENA]
¡û
>W1710883228
LMVL01000038
Alphaproteobacteria
Agrobacterium vitis [LMVL]
350952
351025
+
Gln
CTG
[ENA]
¡û
>W1710916260
LNUW01000017
Alphaproteobacteria
Agrobacterium bohemicum R89-1 [LNUW]
5820
5893
+
Gln
CTG
[ENA]
¡û
>W131036189
ALJF01000010
Alphaproteobacteria
Agrobacterium albertimagni AOL15 [ALJF]
197913
197840
-
Gln
CTG
[ENA]
¡û
>W1711214029
LXKU01000022
Alphaproteobacteria
Agrobacterium rubi [LXKU]
224069
223996
-
Gln
CTG
[ENA]
¡û
>W1711315243
MAVS01000069
Alphaproteobacteria
Agrobacterium vitis [MAVS]
500167
500094
-
Gln
CTG
[ENA]
¡û
>W1711325938
MBEV01000037
Alphaproteobacteria
Agrobacterium vitis [MBEV]
450
377
-
Gln
CTG
[ENA]
¡û
>W1711325968
MBEX01000072
Alphaproteobacteria
Agrobacterium vitis [MBEX]
200777
200704
-
Gln
CTG
[ENA]
¡û
>W1711326010
MBEY01000024
Alphaproteobacteria
Agrobacterium vitis [MBEY]
430121
430194
+
Gln
CTG
[ENA]
¡û
>W1711326039
MBEZ01000003
Alphaproteobacteria
Agrobacterium vitis [MBEZ]
8610
8537
-
Gln
CTG
[ENA]
¡û
>W1711326091
MBFA01000025
Alphaproteobacteria
Agrobacterium vitis [MBFA]
106430
106357
-
Gln
CTG
[ENA]
¡û
>W1711326163
MBFB01000034
Alphaproteobacteria
Agrobacterium vitis [MBFB]
200400
200473
+
Gln
CTG
[ENA]
¡û
>W1711326212
MBFC01000058
Alphaproteobacteria
Agrobacterium vitis [MBFC]
154375
154302
-
Gln
CTG
[ENA]
¡û
>W1711326253
MBFD01000070
Alphaproteobacteria
Agrobacterium vitis [MBFD]
89241
89168
-
Gln
CTG
[ENA]
¡û
>W1711326291
MBFE01000022
Alphaproteobacteria
Agrobacterium vitis [MBFE]
25181
25108
-
Gln
CTG
[ENA]
¡û
>W1711384894
MEDN01000001
Alphaproteobacteria
Agrobacterium sp. SCN 61-19 [MEDN]
239764
239837
+
Gln
CTG
[ENA]
¡û
>W1711489039
MKIM01000024
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
315540
315613
+
Gln
CTG
[ENA]
¡û
>W1711489098
MKIN01000018
Alphaproteobacteria
Allorhizobium taibaishanense [MKIN]
567
494
-
Gln
CTG
[ENA]
¡û
>W1711959637
NBZE01000004
Alphaproteobacteria
Allorhizobium ampelinum vitis [NBZE]
123150
123077
-
Gln
CTG
[ENA]
¡û
>C171049818
CP016450
Alphaproteobacteria
Sinorhizobium sp. RAC02 [CP016450]
2317573
2317646
+
Gln
CTG
-
¡û
>C171050008
CP016499
Alphaproteobacteria
Agrobacterium sp. RAC06 [CP016499]
1890536
1890609
+
Gln
CTG
-
¡û
>WENV181415781
OGCL01025321
[OGCL] hot springs metagenome; Hot spring water
1715
1642
-
Gln
CTG
[ENA]
¢þ
>WENV181416297
OGCL01069821
[OGCL] hot springs metagenome; Hot spring water
946
873
-
Gln
CTG
[ENA]
¢þ
>WENV181416855
OGCL01166699
[OGCL] hot springs metagenome; Hot spring water
513
586
+
Gln
CTG
[ENA]
¢þ
>W141187469
AYLZ02000157
Alphaproteobacteria
Shinella sp. DD12 [AYLZ]
2054
1981
-
Gln
CTG
[ENA]
¡û
>W141237984
BBJU01000029
Alphaproteobacteria
Agrobacterium rubi NBRC 13261 [BBJU]
117414
117487
+
Gln
CTG
[ENA]
¡û
>W141277021
JAEG01000007
Alphaproteobacteria
Ciceribacter selenitireducens ATCC BAA-1503 [JAEG]
17623
17550
-
Gln
CTG
[ENA]
¡û
>WENV183728061
PJTP01025874
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
358
285
-
Gln
CTG
[ENA]
¢þ
>WENV183729230
PJTQ01014224
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
485
412
-
Gln
CTG
[ENA]
¢þ
>WENV183734445
PJTZ01008007
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
723
650
-
Gln
CTG
[ENA]
¢þ
>WENV183735982
PJUB01023671
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
225
298
+
Gln
CTG
[ENA]
¢þ
>WENV183739526
PJUE01028443
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
164
91
-
Gln
CTG
[ENA]
¢þ
>WENV183740968
PJUF01022433
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
388
461
+
Gln
CTG
[ENA]
¢þ
>WENV183744417
PJUK01022427
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
303
230
-
Gln
CTG
[ENA]
¢þ
>WENV170010637
APMI01023319
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
660
733
+
Gln
CTG
[ENA]
¢þ
>WENV170010699
APMI01025612
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
402
475
+
Gln
CTG
[ENA]
¢þ
>WENV170668097
LADL02001019
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
10617
10544
-
Gln
CTG
[ENA]
¢þ
>WENV170680800
LFEF01023356
[LFEF] freshwater metagenome; waterbloom
9752
9825
+
Gln
CTG
[ENA]
¢þ
>WENV171003565
NNBU01000498
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
42449
42522
+
Gln
CTG
[ENA]
¢þ
>C191035840
CP025512
Alphaproteobacteria
Neorhizobium sp. SOG26 [CP025512]
317152
317079
-
Gln
CTG
-
¡û
>W141739462
JNNU01000014
Alphaproteobacteria
Neorhizobium vignae [JNNU]
121876
121803
-
Gln
CTG
[ENA]
¡û
>W1910226242
FMUD01000046
Alphaproteobacteria
Agrobacterium sp. DSM 25558 [FMUD]
35841
35768
-
Gln
CTG
[ENA]
¡û
>W1910226283
FMUE01000005
Alphaproteobacteria
Agrobacterium rosae DSM 25559 [FMUE]
340186
340113
-
Gln
CTG
[ENA]
¡û
>C09100970
CP000633
Alphaproteobacteria
Allorhizobium ampelinum S4 [CP000633, CP000634]
749250
749177
-
Gln
CTG
[Ensembl]
¡û
>W1910831919
MYFN01000007
Alphaproteobacteria
Shinella sumterensis MEC089 [MYFN]
185079
185152
+
Gln
CTG
[ENA]
¡û
>W1910832084
MYFQ01000008
Alphaproteobacteria
Shinella sumterensis MEC087 [MYFQ]
185091
185164
+
Gln
CTG
[ENA]
¡û
>W1911422611
NXEJ01000011
Alphaproteobacteria
Agrobacterium rosae NCPPB 1650 [NXEJ]
128854
128781
-
Gln
CTG
[ENA]
¡û
>W1911551834
PCDP01000083
Alphaproteobacteria
Rhizobium tubonense CCBAU 85046 [PCDP]
36297
36370
+
Gln
CTG
[ENA]
¡û
>W1911551836
PCDQ01000005
Alphaproteobacteria
Rhizobium tumorigenes 1078 [PCDQ]
175504
175577
+
Gln
CTG
[ENA]
¡û
>W1911701457
QNUJ01000001
Alphaproteobacteria
Shinella zoogloeoides PQ7 [QNUJ]
92841
92768
-
Gln
CTG
[ENA]
¡û
>W1810084218
PEQT01000004
Alphaproteobacteria
Agrobacterium rosae B20.3 [PEQT]
2811
2884
+
Gln
CTG
[ENA]
¡û
>W1810089052
PGEL01000008
Alphaproteobacteria
Agrobacterium bohemicum R90 [PGEL]
5815
5888
+
Gln
CTG
[ENA]
¡û
>W1810195498
PKRP01000002
Alphaproteobacteria
Rhizobium sp. TH135 [PKRP]
484469
484396
-
Gln
CTG
[ENA]
¡û
>W1810195916
PKSP01000010
Alphaproteobacteria
Rhizobium sp. KAs_5_22 [PKSP]
3196019
3196092
+
Gln
CTG
[ENA]
¡û
>W1810345972
PVBF01000001
Alphaproteobacteria
Neorhizobium tomejilense T20_22 [PVBF]
758730
758657
-
Gln
CTG
[ENA]
¡û
>W1810346047
PVBG01000014
Alphaproteobacteria
Neorhizobium tomejilense T17_20 [PVBG]
82882
82809
-
Gln
CTG
[ENA]
¡û
>W1810346098
PVBH01000020
Alphaproteobacteria
Neorhizobium tomejilense T11_12 [PVBH]
96168
96241
+
Gln
CTG
[ENA]
¡û
>W1810346139
PVBI01000006
Alphaproteobacteria
Neorhizobium sp. T25_13 [PVBI]
123932
123859
-
Gln
CTG
[ENA]
¡û
>W1810346172
PVBJ01000004
Alphaproteobacteria
Neorhizobium sp. T25_27 [PVBJ]
82412
82339
-
Gln
CTG
[ENA]
¡û
>W1810346226
PVBK01000004
Alphaproteobacteria
Neorhizobium sp. T7_12 [PVBK]
292303
292376
+
Gln
CTG
[ENA]
¡û
>W1810346259
PVBL01000005
Alphaproteobacteria
Neorhizobium sp. T6_25 [PVBL]
78816
78743
-
Gln
CTG
[ENA]
¡û
>W1810346329
PVBM01000023
Alphaproteobacteria
Neorhizobium huautlense DSM 21817 [PVBM]
7739
7666
-
Gln
CTG
[ENA]
¡û
>W1810346355
PVBN01000001
Alphaproteobacteria
Neorhizobium alkalisoli DSM 21826 [PVBN]
418323
418250
-
Gln
CTG
[ENA]
¡û
>W1810584556
QFBC01000001
Alphaproteobacteria
Rhizobium album NS-104 [QFBC]
313498
313571
+
Gln
CTG
[ENA]
¡û
>W1810659773
QJKM01000002
Alphaproteobacteria
Rhizobium terrae NAU-18 [QJKM]
396441
396514
+
Gln
CTG
[ENA]
¡û
>W1810670688
QJRY01000001
Alphaproteobacteria
Rhizobium wuzhouense W44 [QJRY]
614920
614993
+
Gln
CTG
[ENA]
¡û
>W1810758727
QPIX01000003
Alphaproteobacteria
Ciceribacter lividus DSM 25528 [QPIX]
327222
327149
-
Gln
CTG
[ENA]
¡û
>W1810917612
QWBU01000003
Alphaproteobacteria
Shinella sp. WSJ-2 [QWBU]
9662
9589
-
Gln
CTG
[ENA]
¡û
>SRA1016144
SRR023846.367182
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
250
177
-
Gln
CTG
[SRA]
>C151101675
HG938353
Alphaproteobacteria
Neorhizobium galegae bv. orientalis str. HAMBI 540 [HG938353]
312750
312677
-
Gln
CTG
[Ensembl]
¡û
>C151101722
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
373756
373683
-
Gln
CTG
[Ensembl]
¡û
>W1510052886
CCRG01000012
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRG]
120884
120811
-
Gln
CTG
[ENA]
¡û
>W1510052902
CCRH01000001
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRH]
313524
313597
+
Gln
CTG
[ENA]
¡û
>W1510052954
CCRI01000003
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRI]
430003
429930
-
Gln
CTG
[ENA]
¡û
>W1510052991
CCRJ01000002
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
229317
229390
+
Gln
CTG
[ENA]
¡û
>W1510053036
CCRK01000001
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRK]
449654
449581
-
Gln
CTG
[ENA]
¡û
>W1510053095
CCRL01000004
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRL]
182306
182233
-
Gln
CTG
[ENA]
¡û
>W1510053150
CCRM01000020
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRM]
76893
76820
-
Gln
CTG
[ENA]
¡û
>W1510053166
CCRN01000001
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRN]
691434
691361
-
Gln
CTG
[ENA]
¡û
>W1511509180
JXQV01000016
Alphaproteobacteria
Agrobacterium tumefaciens MEJ076 [JXQV]
3355
3428
+
Gln
CTG
[ENA]
¡û
>C161090436
CP015736
Alphaproteobacteria
Shinella sp. HZN7 [CP015736]
712366
712293
-
Gln
CTG
[Ensembl]
¡û
>W121044144
AHZC01000419
Alphaproteobacteria
Rhizobium sp. PDO1-076 [AHZC]
91204
91131
-
Gln
CTG
[ENA]
¡û
>W121086629
AKKC01000324
Alphaproteobacteria
Rhizobium sp. CF080 [AKKC]
1575
1648
+
Gln
CTG
[ENA]
¡û
>W1610649087
LJHS01000020
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
30285
30212
-
Gln
CTG
[ENA]
¡û
>W1610649463
LJIB01000007
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
117571
117498
-
Gln
CTG
[ENA]
¡û
>W1610723843
LMDR01000001
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
976721
976794
+
Gln
CTG
[ENA]
¡û
>W1610730894
LMJE01000001
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
976720
976793
+
Gln
CTG
[ENA]
¡û
>W1610735374
LMMM01000001
Alphaproteobacteria
Rhizobium sp. Leaf262 [LMMM]
362878
362805
-
Gln
CTG
[ENA]
¡û
>W1610737144
LMNX01000001
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
717730
717803
+
Gln
CTG
[ENA]
¡û
>W1610737263
LMNZ01000009
Alphaproteobacteria
Rhizobium sp. Leaf311 [LMNZ]
43686
43613
-
Gln
CTG
[ENA]
¡û
>W1610737571
LMOF01000006
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
650437
650364
-
Gln
CTG
[ENA]
¡û
>W1610745154
LMVL01000038
Alphaproteobacteria
Agrobacterium vitis [LMVL]
350952
351025
+
Gln
CTG
[ENA]
¡û
>W1610774499
LNUW01000017
Alphaproteobacteria
Agrobacterium bohemicum R89-1 [LNUW]
5820
5893
+
Gln
CTG
[ENA]
¡û
>W1611001033
LXKU01000022
Alphaproteobacteria
Agrobacterium rubi [LXKU]
224069
223996
-
Gln
CTG
[ENA]
¡û
>W1710540098
FNWM01000002
Alphaproteobacteria
Rhizobium sp. NFR12 [FNWM]
184362
184289
-
Gln
CTG
[ENA]
¡û
>W1710556794
FOKM01000003
Alphaproteobacteria
Rhizobium sp. NFR07 [FOKM]
407543
407616
+
Gln
CTG
[ENA]
¡û
>W1710595649
FTMB01000006
Alphaproteobacteria
Rhizobium sp. RU20A [FTMB]
10692
10619
-
Gln
CTG
[ENA]
¡û
>W1710596530
FTMQ01000001
Alphaproteobacteria
Rhizobium sp. RU33A [FTMQ]
883967
883894
-
Gln
CTG
[ENA]
¡û
>W1710606426
FWXU01000051
Alphaproteobacteria
Rhizobium sp. RU36D [FWXU]
9450
9523
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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