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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.781133 (31 seq.)
>W1711055111
LRUI01000009
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
122204
122131
-
Cys
GCA
[ENA]
¡û
>W131241484
BARX01000007
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
483
410
-
Cys
GCA
[ENA]
¡û
>W1711499150
MKQD01000020
Gammaproteobacteria
Thalassotalea sp. PP2-459 [MKQD]
524
451
-
Cys
GCA
[ENA]
¡û
>W1711947442
NBOC01000006
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
83204
83131
-
Cys
GCA
[ENA]
¡û
>W1712070451
NGNS01000005
Gammaproteobacteria
Neiella marina [NGNS]
161256
161329
+
Cys
GCA
[ENA]
¡û
>C171066080
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
1893482
1893555
+
Cys
GCA
-
¡û
>WENV170782502
MAAC01010171
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
468488
468415
-
Cys
GCA
[ENA]
¢þ
>C181177225
CP029347
Gammaproteobacteria
Saliniradius amylolyticus HMF8227 [CP029347]
1331540
1331613
+
Cys
GCA
-
¡û
>C191130494
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1022998
1022925
-
Cys
GCA
-
¡û
>C191160600
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
2057
1984
-
Cys
GCA
-
¡û
>W1910178287
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89100
89173
+
Cys
GCA
[ENA]
¡û
>W1910178291
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89903
89976
+
Cys
GCA
[ENA]
¡û
>W1910796225
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
2778052
2777979
-
Cys
GCA
[ENA]
¡û
>W1911585132
PIPR01000001
Gammaproteobacteria
Pseudidiomarina aestuarii KYW314 [PIPR]
512714
512787
+
Cys
GCA
[ENA]
¡û
>W1911585633
PIQB01000001
Gammaproteobacteria
Pseudidiomarina planktonica TS-T11 [PIQB]
390698
390771
+
Cys
GCA
[ENA]
¡û
>W1911770237
QXIO01000009
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
150699
150626
-
Cys
GCA
[ENA]
¡û
>W1810425701
PYVF01000019
Gammaproteobacteria
Pseudidiomarina aestuarii A12-4 [PYVF]
8043
8116
+
Cys
GCA
[ENA]
¡û
>W1810425905
PYVR01000001
Gammaproteobacteria
Pseudidiomarina aestuarii Z-E7-4 [PYVR]
12824
12897
+
Cys
GCA
[ENA]
¡û
>W1810758075
QPID01000001
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
47720
47793
+
Cys
GCA
[ENA]
¡û
>W1810887031
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
482904
482831
-
Cys
GCA
[ENA]
¡û
>W1810887113
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2458061
2457988
-
Cys
GCA
[ENA]
¡û
>W1810887122
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2456799
2456726
-
Cys
GCA
[ENA]
¡û
>W1810887206
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2259070
2258997
-
Cys
GCA
[ENA]
¡û
>W1810887215
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2257841
2257768
-
Cys
GCA
[ENA]
¡û
>W1511322706
JQDZ01000047
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
43753
43680
-
Cys
GCA
[ENA]
¡û
>C161049687
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
670635
670562
-
Cys
GCA
-
¡û
>C161049691
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
669819
669746
-
Cys
GCA
-
¡û
>W1610896157
LRUI01000009
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
122204
122131
-
Cys
GCA
[ENA]
¡û
>W1710545244
FOBI01000005
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
102490
102563
+
Cys
GCA
[ENA]
¡û
>W1710553210
FOHK01000006
Gammaproteobacteria
Thalassotalea agarivorans [FOHK]
314
241
-
Cys
GCA
[ENA]
¡û
>W1710609263
FXWH01000001
Gammaproteobacteria
Pseudidiomarina planktonica [FXWH]
1443176
1443103
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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