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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.781138 (82 seq.)
>W1710795669
LJRF01000212
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. ribicola [LJRF]
19489
19416
-
Gly
CCC
[ENA]
¡û
>W1710796250
LJRS01000052
Gammaproteobacteria
Pseudomonas viridiflava [LJRS]
16472
16545
+
Gly
CCC
[ENA]
¡û
>W1710809174
LKEH01000025
Gammaproteobacteria
Pseudomonas viridiflava [LKEH]
423699
423626
-
Gly
CCC
[ENA]
¡û
>W1710878476
LMQZ01000001
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
650122
650049
-
Gly
CCC
[ENA]
¡û
>W131044330
AMQP01000035
Gammaproteobacteria
Pseudomonas viridiflava UASWS0038 [AMQP]
16479
16552
+
Gly
CCC
[ENA]
¡û
>W131051050
AMXG01000045
Gammaproteobacteria
Pseudomonas sp. PAMC 26793 [AMXG]
191867
191940
+
Gly
CCC
[ENA]
¡û
>W1711318679
MAYQ01000005
Gammaproteobacteria
Pseudomonas moraviensis [MAYQ]
46044
46117
+
Gly
CCC
[ENA]
¡û
>W1711499516
MKQJ01000035
Gammaproteobacteria
Pseudomonas koreensis [MKQJ]
248575
248502
-
Gly
CCC
[ENA]
¡û
>W1711625978
MPJC01000009
Gammaproteobacteria
Pseudomonas versuta A4R1.5 [MPJC]
358641
358714
+
Gly
CCC
[ENA]
¡û
>W1711626038
MPJD01000018
Gammaproteobacteria
Pseudomonas versuta A4R1.12 [MPJD]
337453
337380
-
Gly
CCC
[ENA]
¡û
>W1711662386
MQUK01000005
Gammaproteobacteria
Pseudomonas moraviensis [MQUK]
510275
510348
+
Gly
CCC
[ENA]
¡û
>W1712077202
NGUS01000008
Gammaproteobacteria
Pseudomonas sp. PE-S1G-1 [NGUS]
136796
136869
+
Gly
CCC
[ENA]
¡û
>W1712107075
NIXO01000005
Gammaproteobacteria
Pseudomonas sp. K2I15 [NIXO]
163163
163236
+
Gly
CCC
[ENA]
¡û
>C171114317
CP020892
Gammaproteobacteria
Pseudomonas sp. M30-35 [CP020892]
1236411
1236338
-
Gly
CCC
-
¡û
>W141026531
AKXH02000075
Gammaproteobacteria
Pseudomonas fluorescens BBc6R8 [AKXH]
78525
78598
+
Gly
CCC
[ENA]
¡û
>WENV181370989
OFQU01004237
[OFQU] wastewater metagenome; Exp Tend CN 90WW
1670
1597
-
Gly
CCC
[ENA]
¢þ
>W141188849
AYMZ01000003
Gammaproteobacteria
Pseudomonas moraviensis R28-S [AYMZ]
732531
732458
-
Gly
CCC
[ENA]
¡û
>WENV170023128
BCQK01131842
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
363
436
+
Gly
CCC
[ENA]
¢þ
>C181120894
CP025624
Gammaproteobacteria
Pseudomonas sp. NC02 [CP025624]
1543420
1543347
-
Gly
CCC
-
¡û
>C181134611
CP026558
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum R15244 [CP026558]
4828804
4828877
+
Gly
CCC
-
¡û
>C181229621
LT963409
Gammaproteobacteria
Pseudomonas syringae [LT963409]
1269659
1269586
-
Gly
CCC
-
¡û
>C181229822
LT985192
Gammaproteobacteria
Pseudomonas syringae CFBP 2116 [LT985192]
4754404
4754477
+
Gly
CCC
-
¡û
>C191156912
CP038001
Gammaproteobacteria
Pseudomonas sp. SXM-1 [CP038001]
1534968
1534895
-
Gly
CCC
-
¡û
>C191206278
LR134318
Gammaproteobacteria
Pseudomonas fluorescens NCTC9428 [LR134318]
1487117
1487044
-
Gly
CCC
-
¡û
>W141816126
JQJQ01000019
Gammaproteobacteria
Pseudomonas sp. PTA1 [JQJQ]
120786
120859
+
Gly
CCC
[ENA]
¡û
>W1910504636
FYDP01000002
Gammaproteobacteria
Pseudomonas sp. Irchel 3F6 [FYDP]
649855
649782
-
Gly
CCC
[ENA]
¡û
>W1910548058
FZOG01000001
Gammaproteobacteria
Pseudomonas segetis CIP 108523 [FZOG]
75565
75492
-
Gly
CCC
[ENA]
¡û
>W1910620877
LKCD01000046
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum NZIPFR-PS6 [LKCD]
9191
9118
-
Gly
CCC
[ENA]
¡û
>W1910636776
LPNO01000020
Gammaproteobacteria
Pseudomonas sp. ATCC PTA-122608 [LPNO]
76952
77025
+
Gly
CCC
[ENA]
¡û
>W1910757032
MLEE01000015
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum R19646 [MLEE]
133456
133529
+
Gly
CCC
[ENA]
¡û
>W1910757099
MLEF01000050
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum R19657 [MLEF]
4120
4047
-
Gly
CCC
[ENA]
¡û
>W1910757386
MLEN02000001
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum R15300 [MLEN]
1275645
1275718
+
Gly
CCC
[ENA]
¡û
>W1910757497
MLEO01000049
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum R19326 [MLEO]
4120
4047
-
Gly
CCC
[ENA]
¡û
>W1910757553
MLEP01000051
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum R19629 [MLEP]
4120
4047
-
Gly
CCC
[ENA]
¡û
>W1910768190
MOBV01000005
Gammaproteobacteria
Pseudomonas fluorescens 90F12-2 [MOBV]
361445
361518
+
Gly
CCC
[ENA]
¡û
>W1910768461
MOCA01000002
Gammaproteobacteria
Pseudomonas moraviensis 36B3 [MOCA]
238263
238336
+
Gly
CCC
[ENA]
¡û
>W1910768569
MOCB01000010
Gammaproteobacteria
Pseudomonas fluorescens 89F1 [MOCB]
346435
346362
-
Gly
CCC
[ENA]
¡û
>W1910768578
MOCC01000001
Gammaproteobacteria
Pseudomonas fluorescens 90D7A [MOCC]
361455
361528
+
Gly
CCC
[ENA]
¡û
>W1910802591
MTAE01000193
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum FTRS_U6602 [MTAE]
9073
9146
+
Gly
CCC
[ENA]
¡û
>W1910802648
MTAF01000382
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum FTRS_U6603 [MTAF]
261
188
-
Gly
CCC
[ENA]
¡û
>W1910844708
NBAN01000029
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum 5270 [NBAN]
8542
8469
-
Gly
CCC
[ENA]
¡û
>W1911671282
QFZZ01000006
Gammaproteobacteria
Pseudomonas sp. CFBP13508 [QFZZ]
367472
367399
-
Gly
CCC
[ENA]
¡û
>W1810156132
PJBC01000013
Gammaproteobacteria
Pseudomonas sp. Choline-02u-1 [PJBC]
120972
120899
-
Gly
CCC
[ENA]
¡û
>W1810204827
PODN01000001
Gammaproteobacteria
Pseudomonas sp. GP01-A15 [PODN]
110784
110711
-
Gly
CCC
[ENA]
¡û
>W1810204898
PODO01000013
Gammaproteobacteria
Pseudomonas sp. GP01-A5 [PODO]
94752
94679
-
Gly
CCC
[ENA]
¡û
>W1810204945
PODP01000002
Gammaproteobacteria
Pseudomonas sp. GP01-A9 [PODP]
111073
111000
-
Gly
CCC
[ENA]
¡û
>W1810205007
PODQ01000002
Gammaproteobacteria
Pseudomonas sp. GP01-A8 [PODQ]
110784
110711
-
Gly
CCC
[ENA]
¡û
>W1810205065
PODR01000001
Gammaproteobacteria
Pseudomonas sp. GP01-A13 [PODR]
102336
102409
+
Gly
CCC
[ENA]
¡û
>W1810205123
PODS01000001
Gammaproteobacteria
Pseudomonas sp. GP01-A14 [PODS]
94756
94683
-
Gly
CCC
[ENA]
¡û
>W1810205173
PODT01000001
Gammaproteobacteria
Pseudomonas sp. GP01-A3 [PODT]
110746
110673
-
Gly
CCC
[ENA]
¡û
>W1810205243
PODU01000005
Gammaproteobacteria
Pseudomonas sp. GP01-A6 [PODU]
62061
62134
+
Gly
CCC
[ENA]
¡û
>W1810205301
PODV01000002
Gammaproteobacteria
Pseudomonas sp. GP01-A1 [PODV]
110784
110711
-
Gly
CCC
[ENA]
¡û
>W1810205360
PODW01000003
Gammaproteobacteria
Pseudomonas sp. GP01-A4 [PODW]
102324
102397
+
Gly
CCC
[ENA]
¡û
>W1810205416
PODX01000001
Gammaproteobacteria
Pseudomonas sp. GP01-A11 [PODX]
111290
111217
-
Gly
CCC
[ENA]
¡û
>W1810205478
PODY01000007
Gammaproteobacteria
Pseudomonas sp. FW215-L2 [PODY]
94752
94679
-
Gly
CCC
[ENA]
¡û
>W1810580685
QETJ01000021
Gammaproteobacteria
Pseudomonas sp. NDM [QETJ]
47271
47344
+
Gly
CCC
[ENA]
¡û
>W1810670299
QJRR01000008
Gammaproteobacteria
Pseudomonas koreensis LB-090714 [QJRR]
21007
20934
-
Gly
CCC
[ENA]
¡û
>W1810670339
QJRS01000003
Gammaproteobacteria
Pseudomonas koreensis 57B-090624 [QJRS]
20216
20143
-
Gly
CCC
[ENA]
¡û
>C151097117
CP012676
Gammaproteobacteria
Pseudomonas versuta L10.10 [CP012676]
3339996
3340069
+
Gly
CCC
-
¡û
>W1511400045
JTGG01000010
Gammaproteobacteria
Pseudomonas fluorescens SF39a [JTGG]
13277
13204
-
Gly
CCC
[ENA]
¡û
>W1511509311
JXQY01000013
Gammaproteobacteria
Pseudomonas fluorescens MEP34 [JXQY]
32765
32838
+
Gly
CCC
[ENA]
¡û
>W11160787
AFFX01000002
Gammaproteobacteria
Pseudomonas sp. S9 [AFFX]
38851
38778
-
Gly
CCC
[ENA]
¡û
>C161041840
CP012400
Gammaproteobacteria
Pseudomonas yamanorum LBUM636 [CP012400]
5026062
5026135
+
Gly
CCC
[Ensembl]
¡û
>C161079357
CP014947
Gammaproteobacteria
Pseudomonas koreensis D26 [CP014947]
2121200
2121127
-
Gly
CCC
[Ensembl]
¡û
>W121031915
AHHC01000084
Gammaproteobacteria
Pseudomonas sp. PAMC 25886 [AHHC]
273256
273329
+
Gly
CCC
[ENA]
¡û
>W121044393
AHZM01000083
Gammaproteobacteria
Pseudomonas sp. R62 [AHZM]
5132
5205
+
Gly
CCC
[ENA]
¡û
>W121101483
AKVH01000109
Gammaproteobacteria
Pseudomonas sp. Ag1 [AKVH]
25617
25544
-
Gly
CCC
[ENA]
¡û
>W1610538631
JRXH01000017
Gammaproteobacteria
Pseudomonas viridiflava [JRXH]
16474
16547
+
Gly
CCC
[ENA]
¡û
>W1610620647
LHPA01000017
Gammaproteobacteria
Pseudomonas sp. RIT-PI-o [LHPA]
116915
116988
+
Gly
CCC
[ENA]
¡û
>W1610629953
LIHZ01000132
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum [LIHZ]
133534
133607
+
Gly
CCC
[ENA]
¡û
>W1610630039
LIIB01000067
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum [LIIB]
8624
8551
-
Gly
CCC
[ENA]
¡û
>W1610659626
LJRF01000212
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. ribicola [LJRF]
19489
19416
-
Gly
CCC
[ENA]
¡û
>W1610660207
LJRS01000052
Gammaproteobacteria
Pseudomonas viridiflava [LJRS]
16472
16545
+
Gly
CCC
[ENA]
¡û
>W1610673280
LKEH01000025
Gammaproteobacteria
Pseudomonas viridiflava [LKEH]
423699
423626
-
Gly
CCC
[ENA]
¡û
>W1610740822
LMQZ01000001
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
650122
650049
-
Gly
CCC
[ENA]
¡û
>W1611062022
MAYQ01000005
Gammaproteobacteria
Pseudomonas moraviensis [MAYQ]
46044
46117
+
Gly
CCC
[ENA]
¡û
>W1710546224
FOCB01000001
Gammaproteobacteria
Pseudomonas sp. ok272 [FOCB]
461286
461213
-
Gly
CCC
[ENA]
¡û
>W1710569448
FOUL01000002
Gammaproteobacteria
Pseudomonas sp. ok602 [FOUL]
461305
461232
-
Gly
CCC
[ENA]
¡û
>W1710641423
JRXH01000017
Gammaproteobacteria
Pseudomonas viridiflava [JRXH]
16474
16547
+
Gly
CCC
[ENA]
¡û
>W1710748341
LHPA01000017
Gammaproteobacteria
Pseudomonas sp. RIT-PI-o [LHPA]
116915
116988
+
Gly
CCC
[ENA]
¡û
>W1710761092
LIHZ01000132
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum [LIHZ]
133534
133607
+
Gly
CCC
[ENA]
¡û
>W1710761178
LIIB01000067
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum [LIIB]
8624
8551
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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