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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.781994 (52 seq.)
>W1710802241
LJXT01000082
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
4893
4966
+
Trp
CCA
[ENA]
¡û
>W131053373
AMZY02000010
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
310534
310461
-
Trp
CCA
[ENA]
¡û
>W131146341
AQHR01000107
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
148181
148108
-
Trp
CCA
[ENA]
¡û
>W131223087
AUBU01000002
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
59226
59299
+
Trp
CCA
[ENA]
¡û
>W131223128
AUBV01000003
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
328611
328682
+
Trp
CCA
[ENA]
¡û
>W131223228
AUBX01000016
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
307003
307076
+
Trp
CCA
[ENA]
¡û
>W1711503738
MKTW01000010
Bacteroidota
Sphingobacteriales bacterium 44-61 [MKTW]
129182
129255
+
Trp
CCA
[ENA]
¡û
>W1711707954
MSSX01000004
Bacteroidota
Algoriphagus faecimaris [MSSX]
67028
66955
-
Trp
CCA
[ENA]
¡û
>WENV181233826
OFET01000126
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
62085
62156
+
Trp
CCA
[ENA]
¢þ
>WENV181234765
OFEU01004807
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
703
774
+
Trp
CCA
[ENA]
¢þ
>WENV181402407
OFTY01001143
[OFTY] sludge metagenome; sludge
6024
5953
-
Trp
CCA
[ENA]
¢þ
>WENV181844066
OGVV01006958
[OGVV] freshwater metagenome; freshwater
860
931
+
Trp
CCA
[ENA]
¢þ
>W141278916
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
3821222
3821295
+
Trp
CCA
[ENA]
¡û
>WENV170192609
CEPF01034445
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1020
947
-
Trp
CCA
[ENA]
¢þ
>WENV170192996
CEPG01046722
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
491
418
-
Trp
CCA
[ENA]
¢þ
>WENV170408931
CEUI01102601
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
275
202
-
Trp
CCA
[ENA]
¢þ
>WENV170574478
FLYM01043747
[FLYM] hot springs metagenome; Sediment
265
192
-
Trp
CCA
[ENA]
¢þ
>WENV170574527
FLYM01053979
[FLYM] hot springs metagenome; Sediment
1799
1870
+
Trp
CCA
[ENA]
¢þ
>WENV170837048
MDSZ01142198
[MDSZ] marine metagenome; seawater
1529
1456
-
Trp
CCA
[ENA]
¢þ
>WENV170984839
MWVW01000604
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
7536
7463
-
Trp
CCA
[ENA]
¢þ
>WENV170985625
MWVX01000050
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
34259
34332
+
Trp
CCA
[ENA]
¢þ
>WENV170985626
MWVX01000050
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
35338
35265
-
Trp
CCA
[ENA]
¢þ
>WENV170986263
MWVX01025635
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1500
1573
+
Trp
CCA
[ENA]
¢þ
>WENV170988743
MWVY01001697
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
174
245
+
Trp
CCA
[ENA]
¢þ
>WENV170989967
MWVZ01167358
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
107
36
-
Trp
CCA
[ENA]
¢þ
>WENV170990316
MWWA01000816
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
4097
4170
+
Trp
CCA
[ENA]
¢þ
>WENV170990411
MWWA01005382
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
1264
1193
-
Trp
CCA
[ENA]
¢þ
>WENV170998174
MWWI01029385
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
77
6
-
Trp
CCA
[ENA]
¢þ
>C181187369
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
2052028
2051957
-
Trp
CCA
-
¡û
>C191175216
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
272140
272069
-
Trp
CCA
-
¡û
>C191189191
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
273099
273028
-
Trp
CCA
-
¡û
>W1910548306
FZOK01000008
Bacteroidota
Belliella buryatensis 5C [FZOK]
109224
109153
-
Trp
CCA
[ENA]
¡û
>W1910932894
NIUC01000002
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
592629
592558
-
Trp
CCA
[ENA]
¡û
>W1911775203
QXML01000001
Bacteroidota
Algoriphagus lacus N3 [QXML]
870200
870271
+
Trp
CCA
[ENA]
¡û
>W1810400583
PYGF01000003
Bacteroidota
Cecembia rubra DSM 28057 [PYGF]
115397
115326
-
Trp
CCA
[ENA]
¡û
>W1810682169
QKTX01000006
Bacteroidota
Algoriphagus aquaeductus T4 [QKTX]
122167
122238
+
Trp
CCA
[ENA]
¡û
>W1810705055
QMIK01000003
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
473067
473138
+
Trp
CCA
[ENA]
¡û
>ENV09003740
ADGO01163439
Compost metagenome contig00001
256
183
-
Trp
CCA
[ENA]
¡û
>C121010185
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
1804281
1804354
+
Trp
CCA
[Ensembl]
¡û
>C161046170
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
1232714
1232785
+
Trp
CCA
[Ensembl]
¡û
>WENV006453
AACY020173978
Marine microbial communities from Global Ocean Sampling (GOS)
613
538
-
Trp
CCA
[ENA]
>WENV006615
AACY020176854
Marine microbial communities from Global Ocean Sampling (GOS)
1242
1317
+
Trp
CCA
[ENA]
>C131003322
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
274566
274493
-
Trp
CCA
[Ensembl]
¡û
>W1610666098
LJXT01000082
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
4893
4966
+
Trp
CCA
[ENA]
¡û
>WENV076505
AACY024100182
Marine microbial communities from Global Ocean Sampling (GOS)
938
865
-
Trp
CCA
[ENA]
>W1710513382
FNAC01000005
Bacteroidota
Algoriphagus faecimaris [FNAC]
82649
82722
+
Trp
CCA
[ENA]
¡û
>W1710562663
FOPC01000007
Bacteroidota
Algoriphagus hitonicola [FOPC]
118960
119033
+
Trp
CCA
[ENA]
¡û
>W1710571389
FOVW01000004
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
311102
311175
+
Trp
CCA
[ENA]
¡û
>W1710583469
FQUU01000016
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
54493
54566
+
Trp
CCA
[ENA]
¡û
>W1710593743
FRXN01000004
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
345093
345166
+
Trp
CCA
[ENA]
¡û
>W1710594239
FSRC01000004
Bacteroidota
Algoriphagus halophilus [FSRC]
323195
323268
+
Trp
CCA
[ENA]
¡û
>W1710599288
FTOP01000008
Bacteroidota
Belliella pelovolcani [FTOP]
98581
98508
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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