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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782246 (102 seq.)
>W131010450
AHYM01000014
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
221
293
+
Trp
CCA
[ENA]
¡û
>W131037512
AMFD01000010
Bacillota
Lactococcus garvieae I113 [AMFD]
74295
74223
-
Trp
CCA
[ENA]
¡û
>W131037584
AMFE01000091
Bacillota
Lactococcus garvieae Tac2 [AMFE]
184
112
-
Trp
CCA
[ENA]
¡û
>W131044510
AMQS01000027
Bacillota
Lactococcus garvieae DCC43 [AMQS]
151
223
+
Trp
CCA
[ENA]
¡û
>W1711006268
LQOE01000105
Bacillota
Lactococcus sp. DD01 [LQOE]
126
198
+
Trp
CCA
[ENA]
¡û
>W1711228195
LXWJ01000003
Bacillota
Lactococcus lactis [LXWJ]
214324
214396
+
Trp
CCA
[ENA]
¡û
>W1711228329
LXWL01000011
Bacillota
Lactococcus garvieae [LXWL]
77324
77252
-
Trp
CCA
[ENA]
¡û
>W131202428
ASWT01000004
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
621
693
+
Trp
CCA
[ENA]
¡û
>W1711744879
MUIZ01000007
Bacillota
Lactococcus petauri 159469 [MUIZ]
253
325
+
Trp
CCA
[ENA]
¡û
>W1711942780
NBBK01000012
Bacillota
Lactococcus garvieae [NBBK]
152
224
+
Trp
CCA
[ENA]
¡û
>C171042285
CP015894
Bacillota
Lactococcus cremoris 158 [CP015894]
2221191
2221119
-
Trp
CCA
-
¡û
>C171042576
CP015899
Bacillota
Lactococcus cremoris JM1 [CP015899]
2355679
2355607
-
Trp
CCA
-
¡û
>C171042626
CP015900
Bacillota
Lactococcus cremoris JM2 [CP015900]
2332476
2332404
-
Trp
CCA
-
¡û
>C171042690
CP015901
Bacillota
Lactococcus cremoris JM3 [CP015901]
2125265
2125193
-
Trp
CCA
-
¡û
>C171043065
CP015907
Bacillota
Lactococcus cremoris UC109 [CP015907]
1939088
1939016
-
Trp
CCA
-
¡û
>C171043181
CP015909
Bacillota
Lactococcus cremoris JM4 [CP015909]
2350296
2350224
-
Trp
CCA
-
¡û
>C011955
CP000425
Bacillota
Lactococcus cremoris subsp. cremoris SK11 [CP000425]
2396851
2396781
-
Trp
CCA
[Ensembl]
¡û
>C012074
AM406671
Bacillota
Lactococcus cremoris subsp. cremoris MG1363 [AM406671]
2499998
2499928
-
Trp
CCA
[Ensembl]
¡û
>WENV180182259
OAWO01003274
[OAWO] human gut metagenome; faeces
198
270
+
Trp
CCA
[ENA]
¢þ
>WENV180455465
OBXO01004711
[OBXO] human gut metagenome; faeces
181
253
+
Trp
CCA
[ENA]
¢þ
>W141073888
ASXF01000001
Bacillota
Lactococcus cremoris subsp. cremoris TIFN1 [ASXF]
586
658
+
Trp
CCA
[ENA]
¡û
>W141075681
ATBA01000185
Bacillota
Lactococcus cremoris subsp. cremoris TIFN7 [ATBA]
320
392
+
Trp
CCA
[ENA]
¡û
>W141075745
ATBB01000540
Bacillota
Lactococcus cremoris subsp. cremoris TIFN6 [ATBB]
561
633
+
Trp
CCA
[ENA]
¡û
>W141075783
ATBC01000146
Bacillota
Lactococcus cremoris subsp. cremoris TIFN5 [ATBC]
545
617
+
Trp
CCA
[ENA]
¡û
>W141075910
ATBE01000298
Bacillota
Lactococcus cremoris subsp. cremoris TIFN3 [ATBE]
24539
24467
-
Trp
CCA
[ENA]
¡û
>W141096227
AVFE01000026
Bacillota
Lactococcus garvieae TRF1 [AVFE]
32623
32551
-
Trp
CCA
[ENA]
¡û
>W141213936
AZSI01000039
Bacillota
Lactococcus cremoris subsp. cremoris GE214 [AZSI]
10709
10637
-
Trp
CCA
[ENA]
¡û
>W141238111
BBJW01000042
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
7450
7378
-
Trp
CCA
[ENA]
¡û
>WENV182612827
OJJY01019602
[OJJY] metagenome; faeces
138
210
+
Trp
CCA
[ENA]
¢þ
>W141292082
JAUH01000162
Bacillota
Lactococcus cremoris subsp. cremoris HP [JAUH]
102
174
+
Trp
CCA
[ENA]
¡û
>WENV170547741
CXTS01000064
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
2300
2228
-
Trp
CCA
[ENA]
¢þ
>WENV170547936
CXTV01000622
[CXTV] Human gut metagenome genome assembly, contig: mB2_contig000833.; ENVO:feces
146
74
-
Trp
CCA
[ENA]
¢þ
>WENV170548297
CXUD01000240
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
427
355
-
Trp
CCA
[ENA]
¢þ
>WENV170549693
CXVH01000522
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
466
538
+
Trp
CCA
[ENA]
¢þ
>WENV170549787
CXVI01000659
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
152
80
-
Trp
CCA
[ENA]
¢þ
>C181001696
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1243238
1243310
+
Trp
CCA
-
¡û
>W09101684
AAGO01000001
Bacillota
Lactococcus cremoris subsp. cremoris SK11 [AAGO]
849
921
+
Trp
CCA
[ENA]
¡û
>C181201648
CP031538
Bacillota
Lactococcus cremoris 3107 [CP031538]
2349565
2349493
-
Trp
CCA
-
¡û
>C191002619
AP018499
Bacillota
Lactococcus cremoris C4 [AP018499]
553961
554033
+
Trp
CCA
-
¡û
>C191044526
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1934857
1934785
-
Trp
CCA
-
¡û
>C191092482
CP032627
Bacillota
Lactococcus allomyrinae 1JSPR-7 [CP032627]
2108186
2108114
-
Trp
CCA
-
¡û
>C141003851
CP004884
Bacillota
Lactococcus cremoris subsp. cremoris KW2 [CP004884]
2397595
2397523
-
Trp
CCA
[Ensembl]
¡û
>W1910583260
JXJV01000040
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
157
229
+
Trp
CCA
[ENA]
¡û
>W1910583405
JXJZ01000174
Bacillota
Lactococcus cremoris subsp. cremoris ATCC 19257 [JXJZ]
133
205
+
Trp
CCA
[ENA]
¡û
>W1910583518
JXKC01000010
Bacillota
Lactococcus cremoris subsp. tructae DSM 21502 [JXKC]
129
201
+
Trp
CCA
[ENA]
¡û
>W1910641543
LTDA01000001
Bacillota
Lactococcus garvieae KS1546 [LTDA]
77255
77183
-
Trp
CCA
[ENA]
¡û
>W1910796988
MSGR01000170
Bacillota
Lactococcus cremoris subsp. cremoris ASCC880900 [MSGR]
13696
13624
-
Trp
CCA
[ENA]
¡û
>W1910810160
MUHT01000105
Bacillota
Lactococcus cremoris subsp. cremoris ASCC 1263 [MUHT]
16088
16016
-
Trp
CCA
[ENA]
¡û
>W1911503322
OESD01000005
Bacillota
Lactococcus lactis [OESD]
79624
79552
-
Trp
CCA
[ENA]
¡û
>W1911503586
OESJ01000002
Bacillota
Lactococcus lactis [OESJ]
89775
89703
-
Trp
CCA
[ENA]
¡û
>W1911503738
OESM01000001
Bacillota
Lactococcus lactis [OESM]
113781
113709
-
Trp
CCA
[ENA]
¡û
>W1911503793
OESN01000009
Bacillota
Lactococcus lactis [OESN]
344
416
+
Trp
CCA
[ENA]
¡û
>W1911503870
OESP01000010
Bacillota
Lactococcus lactis [OESP]
69343
69271
-
Trp
CCA
[ENA]
¡û
>W1911631367
PUFD01000015
Bacillota
Lactococcus cremoris subsp. cremoris ATCC 19257 [PUFD]
2698
2626
-
Trp
CCA
[ENA]
¡û
>W1810010467
BFFO01000001
Bacillota
Lactococcus termiticola NtB2 [BFFO]
269270
269200
-
Trp
CCA
[ENA]
¡û
>W1810705254
QMJD01000011
Bacillota
Lactococcus cremoris subsp. cremoris KMB_596 [QMJD]
83178
83106
-
Trp
CCA
[ENA]
¡û
>W1810907563
QVHV01000007
Bacillota
Lactococcus petauri AM13-9 [QVHV]
33099
33171
+
Trp
CCA
[ENA]
¡û
>W1510060198
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1174635
1174707
+
Trp
CCA
[ENA]
¡û
>W1510060315
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1174635
1174707
+
Trp
CCA
[ENA]
¡û
>C10108608
CP002094
Bacillota
Lactococcus cremoris subsp. cremoris NZ9000 [CP002094]
2500815
2500743
-
Trp
CCA
[Ensembl]
¡û
>C11112696
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1919063
1918991
-
Trp
CCA
[Ensembl]
¡û
>C11112756
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1932892
1932820
-
Trp
CCA
[Ensembl]
¡û
>W1511314672
JPUJ01000008
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
76925
76853
-
Trp
CCA
[ENA]
¡û
>W1511327323
JQIC01000014
Bacillota
Lactococcus cremoris subsp. cremoris A17 [JQIC]
573144
573072
-
Trp
CCA
[ENA]
¡û
>W1511552312
JZUI01000099
Bacillota
Lactococcus cremoris subsp. cremoris Mast36 [JZUI]
85752
85680
-
Trp
CCA
[ENA]
¡û
>W1511584805
LAVW01000176
Bacillota
Lactococcus cremoris subsp. cremoris DPC6856 [LAVW]
13317
13245
-
Trp
CCA
[ENA]
¡û
>W1511584854
LAVX01000073
Bacillota
Lactococcus cremoris subsp. cremoris DPC6860 [LAVX]
83471
83399
-
Trp
CCA
[ENA]
¡û
>W11157433
AFCC01000004
Bacillota
Lactococcus garvieae 21881 [AFCC]
125
197
+
Trp
CCA
[ENA]
¡û
>W11157521
AFCD01000079
Bacillota
Lactococcus garvieae 8831 [AFCD]
126
198
+
Trp
CCA
[ENA]
¡û
>W11162753
AFHF01000008
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
4336
4408
+
Trp
CCA
[ENA]
¡û
>C121006554
CP003132
Bacillota
Lactococcus cremoris subsp. cremoris A76 [CP003132]
2423542
2423470
-
Trp
CCA
[Ensembl]
¡û
>W121016356
AGQX01000052
Bacillota
Lactococcus garvieae TB25 [AGQX]
258
330
+
Trp
CCA
[ENA]
¡û
>W121016388
AGQY01000012
Bacillota
Lactococcus garvieae LG9 [AGQY]
43368
43296
-
Trp
CCA
[ENA]
¡û
>W121081182
AKFO01000002
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
182
254
+
Trp
CCA
[ENA]
¡û
>W1610072889
BCVK01000113
Bacillota
Lactococcus cremoris subsp. cremoris NBRC 100676 [BCVK]
102
174
+
Trp
CCA
[ENA]
¡û
>C131002204
CP003157
Bacillota
Lactococcus cremoris subsp. cremoris UC509.9 [CP003157]
2221010
2220938
-
Trp
CCA
[Ensembl]
¡û
>W1610635090
LISZ01000216
Bacillota
Lactococcus cremoris subsp. cremoris [LISZ]
1731
1659
-
Trp
CCA
[ENA]
¡û
>W1610635146
LITA01000179
Bacillota
Lactococcus cremoris subsp. cremoris [LITA]
201
273
+
Trp
CCA
[ENA]
¡û
>W1610635239
LITC01000183
Bacillota
Lactococcus cremoris subsp. cremoris [LITC]
6394
6322
-
Trp
CCA
[ENA]
¡û
>W1610635270
LITD01000066
Bacillota
Lactococcus cremoris subsp. cremoris [LITD]
1729
1657
-
Trp
CCA
[ENA]
¡û
>W1610635329
LITE01000138
Bacillota
Lactococcus cremoris subsp. cremoris [LITE]
69175
69103
-
Trp
CCA
[ENA]
¡û
>W1610635379
LITF01000114
Bacillota
Lactococcus cremoris subsp. cremoris [LITF]
69175
69103
-
Trp
CCA
[ENA]
¡û
>W1610635434
LITG01000099
Bacillota
Lactococcus cremoris subsp. cremoris [LITG]
201
273
+
Trp
CCA
[ENA]
¡û
>W1610638830
LIYE01000294
Bacillota
Lactococcus cremoris subsp. cremoris [LIYE]
1729
1657
-
Trp
CCA
[ENA]
¡û
>W1610638851
LIYF01000015
Bacillota
Lactococcus cremoris subsp. cremoris [LIYF]
201
273
+
Trp
CCA
[ENA]
¡û
>W1610638933
LIYG01000089
Bacillota
Lactococcus cremoris subsp. cremoris [LIYG]
31509
31437
-
Trp
CCA
[ENA]
¡û
>W1610856918
LQOE01000105
Bacillota
Lactococcus sp. DD01 [LQOE]
126
198
+
Trp
CCA
[ENA]
¡û
>W1611012112
LXWJ01000003
Bacillota
Lactococcus lactis [LXWJ]
214324
214396
+
Trp
CCA
[ENA]
¡û
>W1611012246
LXWL01000011
Bacillota
Lactococcus garvieae [LXWL]
77324
77252
-
Trp
CCA
[ENA]
¡û
>W1710070007
BCVK01000113
Bacillota
Lactococcus cremoris subsp. cremoris NBRC 100676 [BCVK]
102
174
+
Trp
CCA
[ENA]
¡û
>W1710568175
FOTJ01000009
Bacillota
Lactococcus garvieae [FOTJ]
465
537
+
Trp
CCA
[ENA]
¡û
>W1710620263
JMMZ01000035
Bacillota
Lactococcus cremoris subsp. cremoris IBB477 [JMMZ]
267616
267544
-
Trp
CCA
[ENA]
¡û
>W1710769663
LISZ01000216
Bacillota
Lactococcus cremoris subsp. cremoris [LISZ]
1731
1659
-
Trp
CCA
[ENA]
¡û
>W1710769719
LITA01000179
Bacillota
Lactococcus cremoris subsp. cremoris [LITA]
201
273
+
Trp
CCA
[ENA]
¡û
>W1710769812
LITC01000183
Bacillota
Lactococcus cremoris subsp. cremoris [LITC]
6394
6322
-
Trp
CCA
[ENA]
¡û
>W1710769843
LITD01000066
Bacillota
Lactococcus cremoris subsp. cremoris [LITD]
1729
1657
-
Trp
CCA
[ENA]
¡û
>W1710769902
LITE01000138
Bacillota
Lactococcus cremoris subsp. cremoris [LITE]
69175
69103
-
Trp
CCA
[ENA]
¡û
>W1710769952
LITF01000114
Bacillota
Lactococcus cremoris subsp. cremoris [LITF]
69175
69103
-
Trp
CCA
[ENA]
¡û
>W1710770007
LITG01000099
Bacillota
Lactococcus cremoris subsp. cremoris [LITG]
201
273
+
Trp
CCA
[ENA]
¡û
>W1710774661
LIYE01000294
Bacillota
Lactococcus cremoris subsp. cremoris [LIYE]
1729
1657
-
Trp
CCA
[ENA]
¡û
>W1710774682
LIYF01000015
Bacillota
Lactococcus cremoris subsp. cremoris [LIYF]
201
273
+
Trp
CCA
[ENA]
¡û
>W1710774764
LIYG01000089
Bacillota
Lactococcus cremoris subsp. cremoris [LIYG]
31509
31437
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK