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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782309 (72 seq.)
>W1710793515
LJPL01000002
Bacillota
Streptococcus pasteurianus [LJPL]
6034
6104
+
Thr
GGT
[ENA]
¡û
>W1710989104
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1288114
1288184
+
Thr
GGT
[ENA]
¡û
>W1711080506
LSRA01000053
Bacillota
Streptococcus pasteurianus [LSRA]
20385
20315
-
Thr
GGT
[ENA]
¡û
>C171084868
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
579556
579626
+
Thr
GGT
-
¡û
>WENV180116376
OAQU01000099
[OAQU] human gut metagenome; ENVO:feces
5475
5545
+
Thr
GGT
[ENA]
¢þ
>WENV180116439
OAQV01000001
[OAQV] human gut metagenome; ENVO:feces
189019
188949
-
Thr
GGT
[ENA]
¢þ
>WENV180400586
OBRI01009601
[OBRI] human gut metagenome; ENVO:feces
221
151
-
Thr
GGT
[ENA]
¢þ
>WENV180401584
OBRM01000104
[OBRM] human gut metagenome; ENVO:feces
13786
13716
-
Thr
GGT
[ENA]
¢þ
>WENV180415603
OBVF01000019
[OBVF] human gut metagenome; faeces
186890
186820
-
Thr
GGT
[ENA]
¢þ
>WENV181338552
OFMF01004448
[OFMF] human gut metagenome; human gut
5854
5784
-
Thr
GGT
[ENA]
¢þ
>WENV181476389
OGFE01050550
[OGFE] metagenome; Human gut stool
316
386
+
Thr
GGT
[ENA]
¢þ
>WENV181555193
OGIT01000094
[OGIT] metagenome; Human gut stool
44516
44446
-
Thr
GGT
[ENA]
¢þ
>WENV181557883
OGIW01000421
[OGIW] metagenome; Human gut stool
33052
32982
-
Thr
GGT
[ENA]
¢þ
>WENV181579330
OGJY01068866
[OGJY] metagenome; Human gut stool
1
71
+
Thr
GGT
[ENA]
¢þ
>WENV181879663
OGXF01001323
[OGXF] human gut metagenome; faeces
12871
12801
-
Thr
GGT
[ENA]
¢þ
>WENV181889864
OGXN01001697
[OGXN] human gut metagenome; faeces
14291
14221
-
Thr
GGT
[ENA]
¢þ
>WENV181948523
OGZE01006102
[OGZE] human gut metagenome; faeces
1478
1548
+
Thr
GGT
[ENA]
¢þ
>WENV181965130
OGZS01000655
[OGZS] human gut metagenome; faeces
5392
5462
+
Thr
GGT
[ENA]
¢þ
>WENV182140637
OHKR01000065
[OHKR] human gut metagenome; feces
9333
9263
-
Thr
GGT
[ENA]
¢þ
>WENV182149115
OHLG01000067
[OHLG] human gut metagenome; feces
5370
5440
+
Thr
GGT
[ENA]
¢þ
>WENV182164498
OHMN01000457
[OHMN] human gut metagenome; faeces
33202
33132
-
Thr
GGT
[ENA]
¢þ
>WENV182185621
OHOG01000011
[OHOG] human gut metagenome; feces
8186
8116
-
Thr
GGT
[ENA]
¢þ
>WENV182230078
OHRK01000060
[OHRK] human gut metagenome; feces
5380
5450
+
Thr
GGT
[ENA]
¢þ
>WENV182394706
OIEJ01000412
[OIEJ] human gut metagenome; human gut
10849
10919
+
Thr
GGT
[ENA]
¢þ
>WENV182406263
OIEX01006896
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
276
206
-
Thr
GGT
[ENA]
¢þ
>WENV182413262
OIFX01000205
[OIFX] human gut metagenome; stool
32519
32449
-
Thr
GGT
[ENA]
¢þ
>W141261892
CCBC010000200
Bacillota
Streptococcus gallolyticus [CCBC]
26088
26018
-
Thr
GGT
[ENA]
¡û
>WENV182811279
OJXK01000036
[OJXK] human gut metagenome; human gut
6455
6525
+
Thr
GGT
[ENA]
¢þ
>WENV182814493
OJYK01000129
[OJYK] human gut metagenome; human gut
32497
32427
-
Thr
GGT
[ENA]
¢þ
>WENV182820265
OKAL01000134
[OKAL] human gut metagenome; human gut
5393
5463
+
Thr
GGT
[ENA]
¢þ
>WENV182842408
OKIE01000086
[OKIE] human gut metagenome; human gut
5744
5814
+
Thr
GGT
[ENA]
¢þ
>WENV182848227
OKKG01000117
[OKKG] human gut metagenome; human gut
6001
6071
+
Thr
GGT
[ENA]
¢þ
>WENV182854670
OKMW01000126
[OKMW] human gut metagenome; human gut
7003
7073
+
Thr
GGT
[ENA]
¢þ
>WENV182856258
OKNJ01000036
[OKNJ] human gut metagenome; human gut
4
74
+
Thr
GGT
[ENA]
¢þ
>WENV182862027
OKPJ01000133
[OKPJ] human gut metagenome; human gut
5392
5462
+
Thr
GGT
[ENA]
¢þ
>WENV183603178
OODK01000939
[OODK] human gut metagenome; human gut
13773
13703
-
Thr
GGT
[ENA]
¢þ
>WENV183605711
OODN01000004
[OODN] human gut metagenome; human gut
236365
236295
-
Thr
GGT
[ENA]
¢þ
>WENV183609189
OODQ01002289
[OODQ] human gut metagenome; human gut
1438
1368
-
Thr
GGT
[ENA]
¢þ
>WENV183780904
PPYF01188168
[PPYF] human gut metagenome; stool from patient with Crohn's disease
32573
32503
-
Thr
GGT
[ENA]
¢þ
>C181211615
LS483409
Bacillota
Streptococcus gallolyticus NCTC13773 [LS483409]
579646
579716
+
Thr
GGT
-
¡û
>C181214994
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
503799
503869
+
Thr
GGT
-
¡û
>C191166410
CP039457
Bacillota
Streptococcus pasteurianus WUSP067 [CP039457]
467736
467806
+
Thr
GGT
-
¡û
>W141727315
JNCV01000020
Bacillota
Streptococcus macedonicus [JNCV]
19605
19675
+
Thr
GGT
[ENA]
¡û
>W1810069559
PEBL01000008
Bacillota
Streptococcus macedonicus 211MA [PEBL]
14933
15003
+
Thr
GGT
[ENA]
¡û
>W1810069612
PEBM01000047
Bacillota
Streptococcus macedonicus 27MV [PEBM]
9685
9615
-
Thr
GGT
[ENA]
¡û
>W1810069638
PEBN01000009
Bacillota
Streptococcus macedonicus 19AS [PEBN]
27340
27270
-
Thr
GGT
[ENA]
¡û
>W1810188078
PKIB01000010
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
5639
5709
+
Thr
GGT
[ENA]
¡û
>W1810904655
QVEM01000026
Bacillota
Streptococcus pasteurianus AM21-19 [QVEM]
5325
5255
-
Thr
GGT
[ENA]
¡û
>W1810905301
QVEY01000032
Bacillota
Streptococcus pasteurianus AF13-35 [QVEY]
6432
6502
+
Thr
GGT
[ENA]
¡û
>W1810907436
QVHT01000002
Bacillota
Streptococcus gallolyticus AM24-4 [QVHT]
78194
78264
+
Thr
GGT
[ENA]
¡û
>W1810907638
QVHX01000002
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
258657
258587
-
Thr
GGT
[ENA]
¡û
>W1510069659
CDEY01000006
Bacillota
Streptococcus pasteurianus HC-2909-2 [CDEY]
149178
149108
-
Thr
GGT
[ENA]
¡û
>W10127559
AEEL01000009
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
5515
5585
+
Thr
GGT
[ENA]
¡û
>W10127589
AEEM01000009
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
5508
5578
+
Thr
GGT
[ENA]
¡û
>C11120593
AP012053
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 [AP012053]
507925
507995
+
Thr
GGT
[Ensembl]
¡û
>C11121184
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
438046
438116
+
Thr
GGT
[Ensembl]
¡û
>W1511447398
JUYN01000059
Bacillota
Streptococcus pasteurianus 651_SPAS [JUYN]
13781
13711
-
Thr
GGT
[ENA]
¡û
>W11135047
AEEL01000009
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
5515
5585
+
Thr
GGT
[ENA]
¡û
>W11135077
AEEM01000009
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
5508
5578
+
Thr
GGT
[ENA]
¡û
>C121017493
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
486625
486695
+
Thr
GGT
[Ensembl]
¡û
>C121018008
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
508640
508710
+
Thr
GGT
[Ensembl]
¡û
>C161059327
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
1483245
1483175
-
Thr
GGT
[Ensembl]
¡û
>W1610514154
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
393723
393793
+
Thr
GGT
[ENA]
¡û
>W1610843980
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1288114
1288184
+
Thr
GGT
[ENA]
¡û
>W1610919373
LSRA01000053
Bacillota
Streptococcus pasteurianus [LSRA]
20385
20315
-
Thr
GGT
[ENA]
¡û
>W1710520165
FNFJ01000009
Bacillota
Streptococcus gallolyticus [FNFJ]
6002
6072
+
Thr
GGT
[ENA]
¡û
>W1710521637
FNGN01000009
Bacillota
Streptococcus gallolyticus [FNGN]
39591
39521
-
Thr
GGT
[ENA]
¡û
>W1710538109
FNUH01000007
Bacillota
Streptococcus gallolyticus [FNUH]
108755
108685
-
Thr
GGT
[ENA]
¡û
>W1710545456
FOBM01000016
Bacillota
Streptococcus gallolyticus [FOBM]
29515
29445
-
Thr
GGT
[ENA]
¡û
>W1710551946
FOGM01000004
Bacillota
Streptococcus gallolyticus [FOGM]
6144
6214
+
Thr
GGT
[ENA]
¡û
>W1710558541
FOLZ01000001
Bacillota
Streptococcus gallolyticus [FOLZ]
7836
7906
+
Thr
GGT
[ENA]
¡û
>W1710578341
FPBN01000001
Bacillota
Streptococcus gallolyticus [FPBN]
7836
7906
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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