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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.78242 (43 seq.)
>W1710909714
LNQS01000010
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
130140
130226
+
Leu
TAA
[ENA]
¡û
>W1710909722
LNQS01000013
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
67494
67580
+
Leu
TAA
[ENA]
¡û
>W1711228226
LXWK01000001
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
69189
69275
+
Leu
TAA
[ENA]
¡û
>W1711228282
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
108777
108863
+
Leu
TAA
[ENA]
¡û
>W1711409442
MGOR01001044
Gammaproteobacteria
Chromatiales bacterium RIFOXYA1_FULL_46_5 [MGOR]
4246
4332
+
Leu
TAA
[ENA]
¡û
>W1711486067
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
2128525
2128439
-
Leu
TAA
[ENA]
¡û
>W1711486079
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
416925
416839
-
Leu
TAA
[ENA]
¡û
>W131180611
ARNG01000073
Gammaproteobacteria
Arsukibacterium perlucidum DSM 18276 [ARNG]
98947
99033
+
Leu
TAA
[ENA]
¡û
>W131180648
ARNG01000085
Gammaproteobacteria
Arsukibacterium perlucidum DSM 18276 [ARNG]
228128
228042
-
Leu
TAA
[ENA]
¡û
>W131225030
AUDG01000007
Gammaproteobacteria
Rheinheimera baltica DSM 14885 [AUDG]
109360
109274
-
Leu
TAA
[ENA]
¡û
>W131225059
AUDG01000066
Gammaproteobacteria
Rheinheimera baltica DSM 14885 [AUDG]
11325
11411
+
Leu
TAA
[ENA]
¡û
>WENV181385179
OFRI01044802
[OFRI] wastewater metagenome; Exp Tend VB 90WW
582
496
-
Leu
TAA
[ENA]
¢þ
>WENV181414105
OGCL01000016
[OGCL] hot springs metagenome; Hot spring water
72233
72319
+
Leu
TAA
[ENA]
¢þ
>WENV181837261
OGVK01012698
[OGVK] freshwater metagenome; freshwater
480
394
-
Leu
TAA
[ENA]
¢þ
>WENV181844079
OGVV01008036
[OGVV] freshwater metagenome; freshwater
223
309
+
Leu
TAA
[ENA]
¢þ
>WENV181848492
OGVZ01008993
[OGVZ] freshwater metagenome; freshwater
1244
1158
-
Leu
TAA
[ENA]
¢þ
>WENV170314631
CESO01016850
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
94718
94804
+
Leu
TAA
[ENA]
¢þ
>WENV170521123
CEWF01087655
[CEWF] marine metagenome genome assembly TARA_122_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
91
5
-
Leu
TAA
[ENA]
¢þ
>WENV170928643
MDTG01136933
[MDTG] marine metagenome; seawater
94857
94943
+
Leu
TAA
[ENA]
¢þ
>WENV170937481
MDTG01292462
[MDTG] marine metagenome; seawater
69567
69481
-
Leu
TAA
[ENA]
¢þ
>C191129074
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2222638
2222724
+
Leu
TAA
-
¡û
>C191129084
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
4099282
4099196
-
Leu
TAA
-
¡û
>C191153513
CP037745
Gammaproteobacteria
Rheinheimera sp. D18 [CP037745]
1494079
1494165
+
Leu
TAA
-
¡û
>C191153554
CP037745
Gammaproteobacteria
Rheinheimera sp. D18 [CP037745]
207533
207447
-
Leu
TAA
-
¡û
>W141779386
JONU01000006
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
954164
954078
-
Leu
TAA
[ENA]
¡û
>W141779392
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
79483
79569
+
Leu
TAA
[ENA]
¡û
>W1911492713
OBEB01000001
Gammaproteobacteria
Arsukibacterium tuosuense CGMCC 1.12461 [OBEB]
217641
217555
-
Leu
TAA
[ENA]
¡û
>W1911492717
OBEB01000002
Gammaproteobacteria
Arsukibacterium tuosuense CGMCC 1.12461 [OBEB]
425664
425750
+
Leu
TAA
[ENA]
¡û
>W1511566744
LAHO01000003
Gammaproteobacteria
Arsukibacterium ikkense GCM72 [LAHO]
251172
251086
-
Leu
TAA
[ENA]
¡û
>W1511566765
LAHO01000017
Gammaproteobacteria
Arsukibacterium ikkense GCM72 [LAHO]
10791
10705
-
Leu
TAA
[ENA]
¡û
>W1511573477
LAMX01000015
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
40113
40199
+
Leu
TAA
[ENA]
¡û
>W1511573497
LAMX01000028
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
9487
9401
-
Leu
TAA
[ENA]
¡û
>W1511584702
LAVS01000026
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
20106
20020
-
Leu
TAA
[ENA]
¡û
>W1511584741
LAVS01000096
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
72026
71940
-
Leu
TAA
[ENA]
¡û
>W11162865
AFHI01000013
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
87986
88072
+
Leu
TAA
[ENA]
¡û
>W11162875
AFHI01000020
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
2450
2364
-
Leu
TAA
[ENA]
¡û
>C161058530
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
3487238
3487152
-
Leu
TAA
-
¡û
>W1610768073
LNQS01000010
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
130140
130226
+
Leu
TAA
[ENA]
¡û
>W1610768081
LNQS01000013
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
67494
67580
+
Leu
TAA
[ENA]
¡û
>W1611012143
LXWK01000001
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
69189
69275
+
Leu
TAA
[ENA]
¡û
>W1611012199
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
108777
108863
+
Leu
TAA
[ENA]
¡û
>W1710540876
FNXF01000002
Gammaproteobacteria
Rheinheimera pacifica [FNXF]
94190
94276
+
Leu
TAA
[ENA]
¡û
>W1710540896
FNXF01000009
Gammaproteobacteria
Rheinheimera pacifica [FNXF]
101268
101182
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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