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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782429 (21 seq.)
>W1712082021
NHOS01000002
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
134201
134274
+
Cys
GCA
[ENA]
¡û
>W141291534
JASZ01000015
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
9800
9873
+
Cys
GCA
[ENA]
¡û
>WENV170009844
APMI01003841
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2230
2301
+
Cys
GCA
[ENA]
¢þ
>WENV170009913
APMI01004895
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2230
2301
+
Cys
GCA
[ENA]
¢þ
>C191025418
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
2175006
2174935
-
Cys
GCA
-
¡û
>C191116457
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1230496
1230569
+
Cys
GCA
-
¡û
>C191120440
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
625786
625713
-
Cys
GCA
-
¡û
>C191120467
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
2854179
2854250
+
Cys
GCA
-
¡û
>C191156070
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
1577950
1577879
-
Cys
GCA
-
¡û
>C191211139
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
1793023
1793094
+
Cys
GCA
-
¡û
>C191212992
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
2740916
2740845
-
Cys
GCA
-
¡û
>W141802062
JPEP01000002
Bacteroidota
Kaistella antarctica antarcticum [JPEP]
1140058
1139987
-
Cys
GCA
[ENA]
¡û
>W1910933656
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
453835
453762
-
Cys
GCA
[ENA]
¡û
>W1511390850
JSYK01000003
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
89470
89543
+
Cys
GCA
[ENA]
¡û
>W1511390893
JSYL01000007
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
189344
189417
+
Cys
GCA
[ENA]
¡û
>W1610095104
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
356361
356434
+
Cys
GCA
[ENA]
¡û
>W1710097899
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
356361
356434
+
Cys
GCA
[ENA]
¡û
>W1710554959
FOIX01000004
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
436011
436082
+
Cys
GCA
[ENA]
¡û
>W1710557454
FOLA01000009
Bacteroidota
Kaistella jeonii [FOLA]
74385
74458
+
Cys
GCA
[ENA]
¡û
>W1710565960
FORQ01000004
Bacteroidota
Kaistella treverensis treverense [FORQ]
88984
89057
+
Cys
GCA
[ENA]
¡û
>W1710598906
FTOI01000001
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
129763
129692
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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