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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782432 (65 seq.)
>W1710785321
LJHT01000061
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
51485
51558
+
Cys
GCA
[ENA]
¡û
>W1710785451
LJHW01000009
Betaproteobacteria
beta proteobacterium AAP65 [LJHW]
24080
24007
-
Cys
GCA
[ENA]
¡û
>W1710785755
LJID01000022
Betaproteobacteria
beta proteobacterium AAP121 [LJID]
15676
15603
-
Cys
GCA
[ENA]
¡û
>W1710821643
LKTU01000029
Betaproteobacteria
Variovorax paradoxus [LKTU]
96474
96547
+
Cys
GCA
[ENA]
¡û
>W1710821699
LKTV01000055
Betaproteobacteria
Variovorax paradoxus [LKTV]
33447
33520
+
Cys
GCA
[ENA]
¡û
>W1710821727
LKTW01000015
Betaproteobacteria
Variovorax paradoxus [LKTW]
86610
86683
+
Cys
GCA
[ENA]
¡û
>W1710821780
LKTX01000014
Betaproteobacteria
Variovorax paradoxus [LKTX]
33447
33520
+
Cys
GCA
[ENA]
¡û
>W1710821855
LKTY01000079
Betaproteobacteria
Variovorax paradoxus [LKTY]
6360
6287
-
Cys
GCA
[ENA]
¡û
>W1710821924
LKTZ01000242
Betaproteobacteria
Variovorax paradoxus [LKTZ]
128
201
+
Cys
GCA
[ENA]
¡û
>W1710893442
LNET01000090
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
41729
41656
-
Cys
GCA
[ENA]
¡û
>W1710990970
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
23376
23303
-
Cys
GCA
[ENA]
¡û
>W131171393
ARGE01000030
Betaproteobacteria
Brachymonas chironomi DSM 19884 [ARGE]
85212
85285
+
Cys
GCA
[ENA]
¡û
>W131180353
ARNA01000049
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
442158
442231
+
Cys
GCA
[ENA]
¡û
>W131229567
AUGX01000003
Betaproteobacteria
Ottowia thiooxydans DSM 14619 [AUGX]
154432
154505
+
Cys
GCA
[ENA]
¡û
>W1711343207
MCIC01000014
Betaproteobacteria
Hydrogenophaga sp. H7 [MCIC]
91628
91701
+
Cys
GCA
[ENA]
¡û
>W1711628334
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
23210
23137
-
Cys
GCA
[ENA]
¡û
>W1711628445
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
150893
150820
-
Cys
GCA
[ENA]
¡û
>W1712049930
NFUT01000002
Betaproteobacteria
Hydrogenophaga sp. IBVHS2 [NFUT]
534753
534826
+
Cys
GCA
[ENA]
¡û
>C171104856
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3512447
3512374
-
Cys
GCA
-
¡û
>WENV181172278
OEIV010579473
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
182
109
-
Cys
GCA
[ENA]
¢þ
>WENV181367977
OFQD01012263
[OFQD] freshwater metagenome; Freshwater Lake
102
175
+
Cys
GCA
[ENA]
¢þ
>W141237759
BBJR01000025
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
162393
162320
-
Cys
GCA
[ENA]
¡û
>W141319075
JBOK01000031
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
217
290
+
Cys
GCA
[ENA]
¡û
>W141425983
JEMG01000001
Betaproteobacteria
Hylemonella gracilis str. Niagara R [JEMG]
1634972
1635045
+
Cys
GCA
[ENA]
¡û
>WENV170680742
LFEF01016362
[LFEF] freshwater metagenome; waterbloom
259
332
+
Cys
GCA
[ENA]
¢þ
>WENV170710383
LNFM01001660
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
38379
38452
+
Cys
GCA
[ENA]
¢þ
>WENV170710491
LNFM01001885
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
45580
45507
-
Cys
GCA
[ENA]
¢þ
>WENV170712473
LNFM01013756
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1464
1537
+
Cys
GCA
[ENA]
¢þ
>WENV170714808
LNFM01103785
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1323
1250
-
Cys
GCA
[ENA]
¢þ
>C181158417
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
1913953
1914026
+
Cys
GCA
-
¡û
>C191154120
CP037867
Betaproteobacteria
Hydrogenophaga pseudoflava DSM 1084 [CP037867]
3155832
3155759
-
Cys
GCA
-
¡û
>W1910175582
BJCL01000001
Betaproteobacteria
Rubrivivax pictus W35 [BJCL]
661333
661260
-
Cys
GCA
[ENA]
¡û
>W1511352992
JROV01001929
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
831
758
-
Cys
GCA
[ENA]
¡û
>W11137140
AEGR01000031
Betaproteobacteria
Hylemonella gracilis ATCC 19624 [AEGR]
122
195
+
Cys
GCA
[ENA]
¡û
>W1511516999
JXWN01000099
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
32287
32214
-
Cys
GCA
[ENA]
¡û
>C121001124
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
2958602
2958529
-
Cys
GCA
[Ensembl]
¡û
>C161002863
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
2760082
2760009
-
Cys
GCA
-
¡û
>W121060097
AJFF01000100
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
9976
10049
+
Cys
GCA
[ENA]
¡û
>W1610070384
BCTF01000013
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
114885
114958
+
Cys
GCA
[ENA]
¡û
>W1610072259
BCUU01000049
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
23219
23146
-
Cys
GCA
[ENA]
¡û
>W1610074388
BCWQ01000002
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
271159
271086
-
Cys
GCA
[ENA]
¡û
>W1610610008
LFYP01000129
Betaproteobacteria
Comamonas kerstersii [LFYP]
51655
51728
+
Cys
GCA
[ENA]
¡û
>W1610649127
LJHT01000061
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
51485
51558
+
Cys
GCA
[ENA]
¡û
>W1610649257
LJHW01000009
Betaproteobacteria
beta proteobacterium AAP65 [LJHW]
24080
24007
-
Cys
GCA
[ENA]
¡û
>W1610649561
LJID01000022
Betaproteobacteria
beta proteobacterium AAP121 [LJID]
15676
15603
-
Cys
GCA
[ENA]
¡û
>W1610685605
LKTU01000029
Betaproteobacteria
Variovorax paradoxus [LKTU]
96474
96547
+
Cys
GCA
[ENA]
¡û
>W1610685661
LKTV01000055
Betaproteobacteria
Variovorax paradoxus [LKTV]
33447
33520
+
Cys
GCA
[ENA]
¡û
>W1610685689
LKTW01000015
Betaproteobacteria
Variovorax paradoxus [LKTW]
86610
86683
+
Cys
GCA
[ENA]
¡û
>W1610685742
LKTX01000014
Betaproteobacteria
Variovorax paradoxus [LKTX]
33447
33520
+
Cys
GCA
[ENA]
¡û
>W1610685817
LKTY01000079
Betaproteobacteria
Variovorax paradoxus [LKTY]
6360
6287
-
Cys
GCA
[ENA]
¡û
>W1610685886
LKTZ01000242
Betaproteobacteria
Variovorax paradoxus [LKTZ]
128
201
+
Cys
GCA
[ENA]
¡û
>W1610753708
LNET01000090
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
41729
41656
-
Cys
GCA
[ENA]
¡û
>W1610845642
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
23376
23303
-
Cys
GCA
[ENA]
¡û
>W1710067757
BCTF01000013
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
114885
114958
+
Cys
GCA
[ENA]
¡û
>W1710069461
BCUU01000049
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
23219
23146
-
Cys
GCA
[ENA]
¡û
>W1710071506
BCWQ01000002
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
271159
271086
-
Cys
GCA
[ENA]
¡û
>W1710534010
FNRO01000001
Betaproteobacteria
Variovorax sp. YR216 [FNRO]
583754
583681
-
Cys
GCA
[ENA]
¡û
>W1710538165
FNUI01000012
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
167518
167591
+
Cys
GCA
[ENA]
¡û
>W1710539563
FNVM01000008
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
242661
242734
+
Cys
GCA
[ENA]
¡û
>W1710545308
FOBJ01000009
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
151421
151348
-
Cys
GCA
[ENA]
¡û
>W1710557150
FOKS01000008
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
149942
149869
-
Cys
GCA
[ENA]
¡û
>W1710562255
FOOV01000005
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
242908
242981
+
Cys
GCA
[ENA]
¡û
>W1710569253
FOUG01000005
Betaproteobacteria
Variovorax sp. OV329 [FOUG]
384142
384069
-
Cys
GCA
[ENA]
¡û
>W1710571872
FOWG01000005
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
20955
20882
-
Cys
GCA
[ENA]
¡û
>W1710731353
LFYP01000129
Betaproteobacteria
Comamonas kerstersii [LFYP]
51655
51728
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK