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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782485 (45 seq.)
>W1710934837
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
1520175
1520102
-
Gly
TCC
[ENA]
¡û
>W131165182
ARBJ01000033
Actinomycetota
Actinoplanes globisporus DSM 43857 [ARBJ]
6059
6132
+
Gly
TCC
[ENA]
¡û
>W131165611
ARBS01000005
Actinomycetota
Longispora albida DSM 44784 [ARBS]
559733
559804
+
Gly
TCC
[ENA]
¡û
>W131185549
ARTT01000015
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
154621
154694
+
Gly
TCC
[ENA]
¡û
>W1711388691
MEIA01000202
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
6479
6552
+
Gly
TCC
[ENA]
¡û
>W1711517413
MLJO01000003
Actinomycetota
Intrasporangium flavum flava [MLJO]
243547
243474
-
Gly
TCC
[ENA]
¡û
>C171131343
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
1400567
1400494
-
Gly
TCC
-
¡û
>WENV181188803
OEOE01385705
[OEOE] activated sludge metagenome; Activated Sludge
125
196
+
Gly
TCC
[ENA]
¢þ
>WENV181189613
OEOF01113712
[OEOF] activated sludge metagenome; Activated Sludge
195
124
-
Gly
TCC
[ENA]
¢þ
>WENV181292202
OFHD01054829
[OFHD] soil metagenome; Clay
264
191
-
Gly
TCC
[ENA]
¢þ
>WENV181371622
OFQV01027539
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
555
626
+
Gly
TCC
[ENA]
¢þ
>WENV181379175
OFRC01044145
[OFRC] wastewater metagenome; Exp Tend CN 10WW
335
406
+
Gly
TCC
[ENA]
¢þ
>W141142502
AWQS01000217
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
1870
1799
-
Gly
TCC
[ENA]
¡û
>W141242936
CAIZ01000168
Actinomycetota
Phycicoccus elongatus Lp2 [CAIZ]
15494
15423
-
Gly
TCC
[ENA]
¡û
>W141242966
CAJA01000397
Actinomycetota
Tetrasphaera australiensis Ben110 [CAJA]
3328
3401
+
Gly
TCC
[ENA]
¡û
>W141243060
CAJC01000181
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
20710
20781
+
Gly
TCC
[ENA]
¡û
>WENV170012397
APMI01168224
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
960
889
-
Gly
TCC
[ENA]
¢þ
>C181078628
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
1400565
1400493
-
Gly
TCC
-
¡û
>C181196283
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
1265080
1265153
+
Gly
TCC
-
¡û
>C191007420
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
3453338
3453267
-
Gly
TCC
-
¡û
>C191026505
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
1317536
1317465
-
Gly
TCC
-
¡û
>W141758318
JNYN01001680
Actinomycetota
Actinoplanes liguriensis [JNYN]
6973
7046
+
Gly
TCC
[ENA]
¡û
>W141758650
JNYT01000575
Actinomycetota
Ampullariella violaceochromogenes [JNYT]
1629
1702
+
Gly
TCC
[ENA]
¡û
>W141775092
JOJL01000023
Actinomycetota
Actinoplanes subtropicus [JOJL]
6497
6570
+
Gly
TCC
[ENA]
¡û
>W1910547332
FZNR01000009
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
6901
6974
+
Gly
TCC
[ENA]
¡û
>W1911492526
OBDY01000003
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
536116
536045
-
Gly
TCC
[ENA]
¡û
>W1911752312
QWLM01000013
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
11804
11731
-
Gly
TCC
[ENA]
¡û
>W1810356477
PVMZ01000001
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
6548
6621
+
Gly
TCC
[ENA]
¡û
>W1810368175
PVZG01000026
Actinomycetota
Pseudosporangium ferrugineum DSM 45348 [PVZG]
7105
7176
+
Gly
TCC
[ENA]
¡û
>W1810596632
QGGR01000010
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
320288
320215
-
Gly
TCC
[ENA]
¡û
>W1810861667
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
2886181
2886108
-
Gly
TCC
[ENA]
¡û
>C11111419
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
1528634
1528707
+
Gly
TCC
[Ensembl]
¡û
>W1511355841
JRTT01000030
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
90541
90468
-
Gly
TCC
[ENA]
¡û
>W1511534730
JYOE01000011
Actinomycetota
Terrabacter sp. 28 [JYOE]
145030
144957
-
Gly
TCC
[ENA]
¡û
>W1511545125
JZKF01000045
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
6950
7021
+
Gly
TCC
[ENA]
¡û
>W1511629600
LDCM01000002
Actinomycetota
Dermacoccus sp. PE3 [LDCM]
91310
91383
+
Gly
TCC
[ENA]
¡û
>C121001072
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
1190610
1190537
-
Gly
TCC
[Ensembl]
¡û
>C121007293
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
1400520
1400447
-
Gly
TCC
[Ensembl]
¡û
>W1610027088
AVPI01000036
Actinomycetota
Knoellia flava TL1 [AVPI]
3259
3332
+
Gly
TCC
[ENA]
¡û
>C131015993
CP005929
Actinomycetota
Actinoplanes sp. N902-109 [CP005929]
1623757
1623686
-
Gly
TCC
[Ensembl]
¡û
>W1610792325
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
1520175
1520102
-
Gly
TCC
[ENA]
¡û
>WENV077232
AAFX01010139
Soil microbial communities from Minnesota Farm
354
281
-
Gly
TCC
[ENA]
>W1710023253
AVPI01000036
Actinomycetota
Knoellia flava TL1 [AVPI]
3259
3332
+
Gly
TCC
[ENA]
¡û
>W1710561041
FONV01000015
Actinomycetota
Actinoplanes philippinensis [FONV]
217820
217747
-
Gly
TCC
[ENA]
¡û
>W1710584744
FQVU01000004
Actinomycetota
Jatrophihabitans endophyticus [FQVU]
224336
224409
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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