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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782805 (68 seq.)
>W1711132241
LUVZ01000046
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
238651
238724
+
Gln
TTG
[ENA]
¡û
>W1711318369
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
2985243
2985314
+
Gln
TTG
[ENA]
¡û
>W1711318462
MAYH01000034
Bacteroidota
Chryseobacterium artocarpi [MAYH]
372352
372425
+
Gln
TTG
[ENA]
¡û
>W131236996
AUMT01000005
Bacteroidota
Chryseobacterium daeguense DSM 19388 [AUMT]
300613
300686
+
Gln
TTG
[ENA]
¡û
>W1711767811
MVAG01000193
Bacteroidota
Chryseobacterium mucoviscidosis VT16-26 [MVAG]
260
187
-
Gln
TTG
[ENA]
¡û
>C171083759
CP018786
Bacteroidota
Chryseobacterium indologenes AA5 [CP018786]
4359836
4359909
+
Gln
TTG
-
¡û
>WENV181205656
OFAO01000641
[OFAO] metagenome; hydrothermal vent
503
432
-
Gln
TTG
[ENA]
¢þ
>W141168459
AXUZ01000017
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
171931
172004
+
Gln
TTG
[ENA]
¡û
>WENV181732027
OGQD01008337
[OGQD] human gut metagenome; faeces
1332
1403
+
Gln
TTG
[ENA]
¢þ
>W141223082
BACY01000190
Bacteroidota
Flavobacterium sp. B17 [BACY]
11812
11739
-
Gln
TTG
[ENA]
¡û
>W141233141
BAVL01000019
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
106644
106717
+
Gln
TTG
[ENA]
¡û
>W141289816
JARQ01000004
Bacteroidota
Chryseobacterium hispalense DSM 25574 [JARQ]
324340
324269
-
Gln
TTG
[ENA]
¡û
>WENV170011753
APMI01087798
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
615
542
-
Gln
TTG
[ENA]
¢þ
>C181056655
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
3316339
3316410
+
Gln
TTG
-
¡û
>C181092449
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
3214850
3214921
+
Gln
TTG
-
¡û
>C191111330
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
2047629
2047558
-
Gln
TTG
-
¡û
>C191112453
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
3884865
3884936
+
Gln
TTG
-
¡û
>C191112957
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
449059
448988
-
Gln
TTG
-
¡û
>C191115182
CP033912
Bacteroidota
Chryseobacterium shandongense H5143 [CP033912]
3194715
3194644
-
Gln
TTG
-
¡û
>C191115253
CP033914
Bacteroidota
Chryseobacterium shandongense G0239 [CP033914]
643037
642966
-
Gln
TTG
-
¡û
>C191115305
CP033915
Bacteroidota
Chryseobacterium shandongense G0207 [CP033915]
3490069
3489998
-
Gln
TTG
-
¡û
>C191116196
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
2594271
2594342
+
Gln
TTG
-
¡û
>C191116280
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
2443874
2443945
+
Gln
TTG
-
¡û
>C191116362
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
381640
381711
+
Gln
TTG
-
¡û
>C191218915
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
2432828
2432899
+
Gln
TTG
-
¡û
>W141815943
JQJM01000043
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
28898
28827
-
Gln
TTG
[ENA]
¡û
>W141817732
JQKZ01000021
Bacteroidota
Chryseobacterium sp. CF284 [JQKZ]
76230
76159
-
Gln
TTG
[ENA]
¡û
>W141819094
JQMA01000020
Bacteroidota
Chryseobacterium sp. CF299 [JQMA]
76238
76167
-
Gln
TTG
[ENA]
¡û
>W1911218386
NRQS01000001
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
356030
355959
-
Gln
TTG
[ENA]
¡û
>W1911218466
NRQT01000002
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
356477
356406
-
Gln
TTG
[ENA]
¡û
>W1911586404
PIZV01000051
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
30698
30627
-
Gln
TTG
[ENA]
¡û
>W1911680503
QICX01000012
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
88827
88756
-
Gln
TTG
[ENA]
¡û
>W1911701850
QNVU01000006
Bacteroidota
Candidatus Chryseobacterium massiliae massiliae CCUG 51329 [QNVU]
57111
57040
-
Gln
TTG
[ENA]
¡û
>W1911701945
QNVV01000006
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
150326
150397
+
Gln
TTG
[ENA]
¡û
>W1911749758
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
3868947
3869018
+
Gln
TTG
[ENA]
¡û
>W1911749788
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
1371076
1371005
-
Gln
TTG
[ENA]
¡û
>W1911749829
QWIV01000013
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
62492
62421
-
Gln
TTG
[ENA]
¡û
>W1911749850
QWIV01000015
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
146488
146559
+
Gln
TTG
[ENA]
¡û
>W1810090004
PGFD01000001
Bacteroidota
Chryseobacterium geocarposphaerae DSM 27617 [PGFD]
2277625
2277696
+
Gln
TTG
[ENA]
¡û
>W1810475296
QAIX01000616
Bacteroidota
Chryseobacterium sp. HMWF001 [QAIX]
77
6
-
Gln
TTG
[ENA]
¡û
>W1810538566
QDFZ01000002
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
114280
114351
+
Gln
TTG
[ENA]
¡û
>W1810570113
QEHP01000048
Bacteroidota
Chryseobacterium sp. HMWF035 [QEHP]
18236
18307
+
Gln
TTG
[ENA]
¡û
>W1810609194
QGTV01000001
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
234196
234267
+
Gln
TTG
[ENA]
¡û
>W1810860749
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
346186
346115
-
Gln
TTG
[ENA]
¡û
>W1511432573
JUGP01000006
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
853277
853350
+
Gln
TTG
[ENA]
¡û
>W1511432806
JUGT01000019
Bacteroidota
Chryseobacterium sp. YR561 [JUGT]
147540
147467
-
Gln
TTG
[ENA]
¡û
>W1511489556
JWTA01000009
Bacteroidota
Chryseobacterium taiwanense TPW19 [JWTA]
102757
102684
-
Gln
TTG
[ENA]
¡û
>W1511587150
LAZY01000036
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
148933
148860
-
Gln
TTG
[ENA]
¡û
>C161055052
CP013293
Bacteroidota
Chryseobacterium sp. IHB B 17019 [CP013293]
2756199
2756272
+
Gln
TTG
[Ensembl]
¡û
>W121086486
AKJY01000078
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
9418
9489
+
Gln
TTG
[ENA]
¡û
>W1610205679
FCNN01000260
Bacteroidota
Chryseobacterium indologenes [FCNN]
13568
13495
-
Gln
TTG
[ENA]
¡û
>W1610436706
FJVD01000008
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
3240602
3240675
+
Gln
TTG
[ENA]
¡û
>W1610943314
LUVZ01000046
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
238651
238724
+
Gln
TTG
[ENA]
¡û
>W1611061712
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
2985243
2985314
+
Gln
TTG
[ENA]
¡û
>W1611061805
MAYH01000034
Bacteroidota
Chryseobacterium artocarpi [MAYH]
372352
372425
+
Gln
TTG
[ENA]
¡û
>W1710207180
FCNN01000260
Bacteroidota
Chryseobacterium indologenes [FCNN]
13568
13495
-
Gln
TTG
[ENA]
¡û
>W1710436442
FJVD01000008
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
3240602
3240675
+
Gln
TTG
[ENA]
¡û
>W1710518196
FNDW01000001
Bacteroidota
Chryseobacterium taeanense [FNDW]
258559
258486
-
Gln
TTG
[ENA]
¡û
>W1710540290
FNWQ01000001
Bacteroidota
Chryseobacterium culicis [FNWQ]
366182
366109
-
Gln
TTG
[ENA]
¡û
>W1710545833
FOBV01000001
Bacteroidota
Chryseobacterium taichungense [FOBV]
496407
496480
+
Gln
TTG
[ENA]
¡û
>W1710554851
FOIU01000001
Bacteroidota
Chryseobacterium wanjuense [FOIU]
221239
221166
-
Gln
TTG
[ENA]
¡û
>W1710565761
FORL01000004
Bacteroidota
Chryseobacterium indologenes [FORL]
8119
8046
-
Gln
TTG
[ENA]
¡û
>W1710583374
FQUT01000003
Bacteroidota
Chryseobacterium arachidis [FQUT]
101343
101416
+
Gln
TTG
[ENA]
¡û
>W1710583376
FQUT01000003
Bacteroidota
Chryseobacterium arachidis [FQUT]
267492
267563
+
Gln
TTG
[ENA]
¡û
>W1710584465
FQVO01000002
Bacteroidota
Chryseobacterium takakiae [FQVO]
307856
307785
-
Gln
TTG
[ENA]
¡û
>W1710596723
FTMT01000030
Bacteroidota
Chryseobacterium sp. RU33C [FTMT]
41459
41386
-
Gln
TTG
[ENA]
¡û
>W1710599052
FTOL01000002
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
209691
209762
+
Gln
TTG
[ENA]
¡û
>W1710599579
FTOV01000002
Bacteroidota
Chryseobacterium gambrini [FTOV]
356816
356743
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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