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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.783405 (70 seq.)
>W131163047
AQZM01000002
Betaproteobacteria
Methyloversatilis universalis EHg5 [AQZM]
616974
617047
+
Gly
TCC
[ENA]
¡û
>W131166930
ARCV01000006
Betaproteobacteria
Methyloversatilis thermotolerans NVD [ARCV]
43082
43155
+
Gly
TCC
[ENA]
¡û
>W131170311
ARFL01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
17112
17039
-
Gly
TCC
[ENA]
¡û
>W131178086
ARLH01000068
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
1443
1370
-
Gly
TCC
[ENA]
¡û
>W131186087
ARVV01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ18-153 [ARVV]
712848
712921
+
Gly
TCC
[ENA]
¡û
>W131186648
ARWH01000001
Betaproteobacteria
Methyloversatilis universalis Fam500 [ARWH]
3948829
3948902
+
Gly
TCC
[ENA]
¡û
>W1711503033
MKTG01000012
Betaproteobacteria
Burkholderiales bacterium 68-10 [MKTG]
149
76
-
Gly
TCC
[ENA]
¡û
>C171119352
CP021455
Betaproteobacteria
Comamonas serinivorans DSM 26136 [CP021455]
4494127
4494054
-
Gly
TCC
-
¡û
>WENV180013717
FMSI01139577
[FMSI] soil metagenome; Soil
274
201
-
Gly
TCC
[ENA]
¢þ
>WENV180036981
FVAA010502775
[FVAA] soil metagenome; Soil
1
71
+
Gly
TCC
[ENA]
¢þ
>WENV180209133
OBAK01020848
[OBAK] marine metagenome; ENVO.00002150
303
230
-
Gly
TCC
[ENA]
¢þ
>WENV180311479
OBJT01324922
[OBJT] soil metagenome; soil
65
138
+
Gly
TCC
[ENA]
¢þ
>WENV180392603
OBPP01000049
[OBPP] marine metagenome; ENVO:00002042
1149
1222
+
Gly
TCC
[ENA]
¢þ
>WENV180393665
OBPR01000571
[OBPR] marine metagenome; ENVO:00002042
1839
1766
-
Gly
TCC
[ENA]
¢þ
>WENV180591215
OCOV01003990
[OCOV] marine metagenome; ENVO:01000301
322
249
-
Gly
TCC
[ENA]
¢þ
>WENV180692339
OCZS010477186
[OCZS] soil metagenome; soil
156
83
-
Gly
TCC
[ENA]
¢þ
>WENV180731860
ODGW01023379
[ODGW] human metagenome; G_DNA_Supragingival plaque
284
211
-
Gly
TCC
[ENA]
¢þ
>WENV180751589
ODHS01081396
[ODHS] human metagenome; G_DNA_Supragingival plaque
358
431
+
Gly
TCC
[ENA]
¢þ
>WENV180805349
ODJG01198236
[ODJG] human metagenome; G_DNA_Supragingival plaque
204
131
-
Gly
TCC
[ENA]
¢þ
>WENV180834673
ODKD01099904
[ODKD] human metagenome; G_DNA_Supragingival plaque
207
134
-
Gly
TCC
[ENA]
¢þ
>WENV180835730
ODKE01009907
[ODKE] human metagenome; G_DNA_Supragingival plaque
284
211
-
Gly
TCC
[ENA]
¢þ
>WENV180934318
ODTR01111581
[ODTR] human metagenome; G_DNA_Supragingival plaque
158
85
-
Gly
TCC
[ENA]
¢þ
>WENV180938346
ODTX01001516
[ODTX] human metagenome; G_DNA_Supragingival plaque
13775
13848
+
Gly
TCC
[ENA]
¢þ
>WENV180981799
ODVE01062493
[ODVE] human metagenome; G_DNA_Supragingival plaque
413
486
+
Gly
TCC
[ENA]
¢þ
>WENV180983684
ODVF01028720
[ODVF] human metagenome; G_DNA_Supragingival plaque
1114
1187
+
Gly
TCC
[ENA]
¢þ
>WENV180987663
ODVK01069885
[ODVK] human metagenome; G_DNA_Supragingival plaque
346
419
+
Gly
TCC
[ENA]
¢þ
>WENV181006641
ODWA01070230
[ODWA] human metagenome; G_DNA_Buccal mucosa
223
296
+
Gly
TCC
[ENA]
¢þ
>WENV181050837
ODYD01070525
[ODYD] human metagenome; G_DNA_Supragingival plaque
284
211
-
Gly
TCC
[ENA]
¢þ
>WENV181070579
OEAE01003565
[OEAE] human metagenome; G_DNA_Supragingival plaque
284
211
-
Gly
TCC
[ENA]
¢þ
>WENV181167667
OEIU01056035
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
863
936
+
Gly
TCC
[ENA]
¢þ
>WENV181169489
OEIV010002860
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6285
6358
+
Gly
TCC
[ENA]
¢þ
>WENV181192170
OEPS010448348
[OEPS] soil metagenome; soil
286
213
-
Gly
TCC
[ENA]
¢þ
>WENV181223035
OFDC01001333
[OFDC] hot springs metagenome; Water
13127
13200
+
Gly
TCC
[ENA]
¢þ
>WENV181227451
OFDN01010881
[OFDN] hot springs metagenome; Water
328
255
-
Gly
TCC
[ENA]
¢þ
>WENV181311789
OFJB01012417
[OFJB] sludge metagenome; sludge
1904
1977
+
Gly
TCC
[ENA]
¢þ
>WENV181401382
OFTX01000074
[OFTX] sludge metagenome; sludge
59631
59704
+
Gly
TCC
[ENA]
¢þ
>WENV181402548
OFTY01003831
[OFTY] sludge metagenome; sludge
383
310
-
Gly
TCC
[ENA]
¢þ
>WENV181402732
OFTY01030472
[OFTY] sludge metagenome; sludge
330
257
-
Gly
TCC
[ENA]
¢þ
>WENV181402750
OFTY01036778
[OFTY] sludge metagenome; sludge
115
42
-
Gly
TCC
[ENA]
¢þ
>WENV181414592
OGCL01000750
[OGCL] hot springs metagenome; Hot spring water
31235
31162
-
Gly
TCC
[ENA]
¢þ
>WENV181844179
OGVV01017596
[OGVV] freshwater metagenome; freshwater
564
637
+
Gly
TCC
[ENA]
¢þ
>W141216096
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
2350425
2350352
-
Gly
TCC
[ENA]
¡û
>WENV183674589
ORJL011407129
[ORJL] groundwater metagenome; groundwater
166
93
-
Gly
TCC
[ENA]
¢þ
>WENV183725607
PJQF01003495
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
1444
1517
+
Gly
TCC
[ENA]
¢þ
>WENV170645727
JPYU01022577
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
404
331
-
Gly
TCC
[ENA]
¢þ
>WENV170654916
JRYL01086958
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
118
191
+
Gly
TCC
[ENA]
¢þ
>WENV170660783
JXWU01029459
[JXWU] soil metagenome; rice field; organic control Plot
256
183
-
Gly
TCC
[ENA]
¢þ
>C181158449
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
358228
358155
-
Gly
TCC
-
¡û
>C181176175
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 [CP029210]
191217
191290
+
Gly
TCC
-
¡û
>C191182028
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
635180
635253
+
Gly
TCC
-
¡û
>W1910699735
MERU01000013
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
979
906
-
Gly
TCC
[ENA]
¡û
>W1910699918
MESA01000027
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 [MESA]
113110
113183
+
Gly
TCC
[ENA]
¡û
>W1910700356
MESK01000112
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
113159
113232
+
Gly
TCC
[ENA]
¡û
>W1911502776
OEQA01000003
Betaproteobacteria
Ottowia massiliensis Marseille-P4747 [OEQA]
259300
259373
+
Gly
TCC
[ENA]
¡û
>W1911775025
QXMG01000043
Betaproteobacteria
Caldimonas tepidiphila YIM 730274 [QXMG]
49832
49905
+
Gly
TCC
[ENA]
¡û
>W1810273290
PSNX01000016
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
344
271
-
Gly
TCC
[ENA]
¡û
>W1810273337
PSNY01000031
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
17298
17371
+
Gly
TCC
[ENA]
¡û
>W1810762766
QQAP01000010
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
118153
118080
-
Gly
TCC
[ENA]
¡û
>WENV029379
AACY021194085
Marine microbial communities from Global Ocean Sampling (GOS)
533
460
-
Gly
TCC
[ENA]
>C151081685
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
5761886
5761813
-
Gly
TCC
[Ensembl]
¡û
>C151090624
CP012073
Betaproteobacteria
Ottowia sp. oral taxon 894 W10237 [CP012073]
1412269
1412196
-
Gly
TCC
-
¡û
>W1511348493
JRKM01000001
Betaproteobacteria
Aquabacterium sp. NJ1 [JRKM]
2939478
2939551
+
Gly
TCC
[ENA]
¡û
>W11162826
AFHG01000050
Betaproteobacteria
Methyloversatilis universalis FAM5 [AFHG]
63974
64047
+
Gly
TCC
[ENA]
¡û
>W1610074127
BCWK01000007
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
187693
187766
+
Gly
TCC
[ENA]
¡û
>W1610604888
LFRI01000245
Betaproteobacteria
Aquabacterium parvum [LFRI]
59268
59195
-
Gly
TCC
[ENA]
¡û
>WENV077850
AAFX01114085
Soil microbial communities from Minnesota Farm
531
458
-
Gly
TCC
[ENA]
>W1710071245
BCWK01000007
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
187693
187766
+
Gly
TCC
[ENA]
¡û
>W1710547402
FOCW01000014
Betaproteobacteria
Brachymonas denitrificans DSM 15123 [FOCW]
23923
23996
+
Gly
TCC
[ENA]
¡û
>W1710583686
FQUZ01000030
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
1452
1379
-
Gly
TCC
[ENA]
¡û
>W1710726331
LFRI01000245
Betaproteobacteria
Aquabacterium parvum [LFRI]
59268
59195
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK