This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.784386 (35 seq.)
>W131158411
AQUA01000008
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
75239
75312
+
Cys
GCA
[ENA]
¡û
>W131158414
AQUA01000008
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
81915
81988
+
Cys
GCA
[ENA]
¡û
>W131162929
AQZI01000001
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
430182
430109
-
Cys
GCA
[ENA]
¡û
>WENV016694
AACY020468417
Marine microbial communities from Global Ocean Sampling (GOS)
1227
1300
+
Cys
GCA
[ENA]
>WENV180357419
OBNN01008358
[OBNN] marine metagenome; Coastal water
605
678
+
Cys
GCA
[ENA]
¢þ
>WENV180391325
OBPM01088819
[OBPM] marine metagenome; ENVO:00002010
61
134
+
Cys
GCA
[ENA]
¢þ
>WENV181377037
OFRA01001539
[OFRA] wastewater metagenome; Lake Maggiore Verbania
120
193
+
Cys
GCA
[ENA]
¢þ
>WENV181379524
OFRD01002726
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2820
2893
+
Cys
GCA
[ENA]
¢þ
>WENV181384519
OFRI01002111
[OFRI] wastewater metagenome; Exp Tend VB 90WW
894
821
-
Cys
GCA
[ENA]
¢þ
>WENV181386137
OFRL01000836
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
1022
1095
+
Cys
GCA
[ENA]
¢þ
>WENV181400583
OFSF01011423
[OFSF] wastewater metagenome; Exp Tend VB 100WW
962
1035
+
Cys
GCA
[ENA]
¢þ
>WENV181846122
OGVX01020914
[OGVX] freshwater metagenome; freshwater
302
229
-
Cys
GCA
[ENA]
¢þ
>WENV181855736
OGWM01001122
[OGWM] freshwater metagenome; freshwater
1446
1373
-
Cys
GCA
[ENA]
¢þ
>WENV170572007
FLOH01000443
[FLOH] marine metagenome; water
78343
78270
-
Cys
GCA
[ENA]
¢þ
>WENV170572617
FLOH01001029
[FLOH] marine metagenome; water
1378
1305
-
Cys
GCA
[ENA]
¢þ
>WENV170602036
FUWD010211193
[FUWD] metagenome; unknown
649
576
-
Cys
GCA
[ENA]
¢þ
>WENV170602670
FUWD010252157
[FUWD] metagenome; unknown
467
540
+
Cys
GCA
[ENA]
¢þ
>WENV170625829
FUWD013206723
[FUWD] metagenome; unknown
453
526
+
Cys
GCA
[ENA]
¢þ
>WENV170634049
FUWD013408469
[FUWD] metagenome; unknown
453
526
+
Cys
GCA
[ENA]
¢þ
>C181018667
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
811189
811116
-
Cys
GCA
-
¡û
>C181018701
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
934264
934193
-
Cys
GCA
-
¡û
>C181018733
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
1136942
1137013
+
Cys
GCA
-
¡û
>C181020846
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
795014
795087
+
Cys
GCA
-
¡û
>C181020883
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
746127
746200
+
Cys
GCA
-
¡û
>C181020957
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
752017
752090
+
Cys
GCA
-
¡û
>C181020993
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
742096
742169
+
Cys
GCA
-
¡û
>C181021029
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
712993
713064
+
Cys
GCA
-
¡û
>C181021067
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
707036
707107
+
Cys
GCA
-
¡û
>C181021120
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
614073
614000
-
Cys
GCA
-
¡û
>C181021141
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
731947
732020
+
Cys
GCA
-
¡û
>C181021177
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
711399
711470
+
Cys
GCA
-
¡û
>C181021255
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
755668
755741
+
Cys
GCA
-
¡û
>C181021291
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
689996
690067
+
Cys
GCA
-
¡û
>C181021368
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
767075
767148
+
Cys
GCA
-
¡û
>WENV058268
AACY023323107
Marine microbial communities from Global Ocean Sampling (GOS)
716
789
+
Cys
GCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK