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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.784639 (87 seq.)
>W1710862018
LMEB01000010
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
252
179
-
Gly
TCC
[ENA]
¡û
>W1710873857
LMNC01000007
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
236
163
-
Gly
TCC
[ENA]
¡û
>W1710876107
LMOY01000009
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
347960
348033
+
Gly
TCC
[ENA]
¡û
>W1710877325
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
233
160
-
Gly
TCC
[ENA]
¡û
>W131052441
AMYY01000037
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
27751
27824
+
Gly
TCC
[ENA]
¡û
>W131221569
AUAO01000003
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
361744
361671
-
Gly
TCC
[ENA]
¡û
>W1711407967
MGLI01000172
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
1316
1243
-
Gly
TCC
[ENA]
¡û
>W1711407990
MGLM01000855
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
676
749
+
Gly
TCC
[ENA]
¡û
>W1711718131
MTHE01000023
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
24674
24747
+
Gly
TCC
[ENA]
¡û
>W1711961694
NCSQ01000007
Alphaproteobacteria
Aquidulcibacter paucihalophilus TH1-2 [NCSQ]
26995
27068
+
Gly
TCC
[ENA]
¡û
>W1712106191
NIVP01000018
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
58645
58718
+
Gly
TCC
[ENA]
¡û
>WENV180014169
FPIC01075205
[FPIC] soil metagenome; Soil
79
6
-
Gly
TCC
[ENA]
¢þ
>WENV180018717
FTAI01000046
[FTAI] metagenome; soil
91
18
-
Gly
TCC
[ENA]
¢þ
>WENV180028795
FTJH01000605
[FTJH] metagenome; soil
1609
1682
+
Gly
TCC
[ENA]
¢þ
>WENV180029304
FTJI01492636
[FTJI] metagenome; soil
230
157
-
Gly
TCC
[ENA]
¢þ
>WENV180034071
FTKM01498003
[FTKM] metagenome; soil
108
181
+
Gly
TCC
[ENA]
¢þ
>WENV180034832
FTKR01523946
[FTKR] metagenome; soil
230
157
-
Gly
TCC
[ENA]
¢þ
>WENV180282433
OBIC01000001
[OBIC] beach sand metagenome; beach sand
489097
489170
+
Gly
TCC
[ENA]
¢þ
>WENV180293556
OBIY01000093
[OBIY] beach sand metagenome; beach sand
30306
30379
+
Gly
TCC
[ENA]
¢þ
>WENV180309300
OBJS01000034
[OBJS] beach sand metagenome; beach sand
67729
67802
+
Gly
TCC
[ENA]
¢þ
>WENV181170025
OEIV010020143
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
61
134
+
Gly
TCC
[ENA]
¢þ
>WENV181223249
OFDC01004064
[OFDC] hot springs metagenome; Water
181
108
-
Gly
TCC
[ENA]
¢þ
>WENV181227160
OFDN01002528
[OFDN] hot springs metagenome; Water
181
108
-
Gly
TCC
[ENA]
¢þ
>W08010844
ABRU01000049
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
13700
13630
-
Gly
TCC
[ENA]
¡û
>WENV181379150
OFRC01033536
[OFRC] wastewater metagenome; Exp Tend CN 10WW
410
483
+
Gly
TCC
[ENA]
¢þ
>WENV181385066
OFRI01030595
[OFRI] wastewater metagenome; Exp Tend VB 90WW
815
888
+
Gly
TCC
[ENA]
¢þ
>W141136749
AWGC01000056
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
1418
1491
+
Gly
TCC
[ENA]
¡û
>W141136784
AWGD01000023
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
57948
57875
-
Gly
TCC
[ENA]
¡û
>W141136827
AWGE01000011
Alphaproteobacteria
Asticcacaulis sp. AC466 [AWGE]
95557
95630
+
Gly
TCC
[ENA]
¡û
>W141136862
AWGF01000013
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
173188
173261
+
Gly
TCC
[ENA]
¡û
>WENV181732482
OGQD01044009
[OGQD] human gut metagenome; faeces
574
647
+
Gly
TCC
[ENA]
¢þ
>W141230486
BATC01000079
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
10034
10107
+
Gly
TCC
[ENA]
¡û
>WENV183697652
OUNK010010150
[OUNK] metagenome; soil
2521
2448
-
Gly
TCC
[ENA]
¢þ
>WENV183728305
PJTQ01000012
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
475566
475639
+
Gly
TCC
[ENA]
¢þ
>WENV183739775
PJUF01000008
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
475566
475639
+
Gly
TCC
[ENA]
¢þ
>WENV170009433
APMI01000249
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
142955
143028
+
Gly
TCC
[ENA]
¢þ
>WENV170265488
CERD01197622
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
462
389
-
Gly
TCC
[ENA]
¢þ
>WENV170266188
CERE01047683
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
269
342
+
Gly
TCC
[ENA]
¢þ
>WENV170269306
CERH01090260
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2905
2978
+
Gly
TCC
[ENA]
¢þ
>WENV170594293
FUFK011265312
[FUFK] metagenome; unknown
154
81
-
Gly
TCC
[ENA]
¢þ
>WENV170594364
FUFK011288383
[FUFK] metagenome; unknown
311
238
-
Gly
TCC
[ENA]
¢þ
>WENV170645951
JQGF01001819
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
3891
3964
+
Gly
TCC
[ENA]
¢þ
>WENV170658941
JUGB01000738
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
949
1022
+
Gly
TCC
[ENA]
¢þ
>WENV170784069
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
363533
363460
-
Gly
TCC
[ENA]
¢þ
>WENV170834492
MDSZ01097914
[MDSZ] marine metagenome; seawater
721
648
-
Gly
TCC
[ENA]
¢þ
>C181056266
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
261617
261544
-
Gly
TCC
-
¡û
>C191005649
AP018828
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
828060
828133
+
Gly
TCC
-
¡û
>C191093996
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2089960
2090033
+
Gly
TCC
-
¡û
>C191134427
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
1818254
1818327
+
Gly
TCC
-
¡û
>C191159610
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
387628
387701
+
Gly
TCC
-
¡û
>C191166122
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
2296884
2296811
-
Gly
TCC
-
¡û
>C191220446
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
2060160
2060087
-
Gly
TCC
-
¡û
>W09133859
ACQR01000007
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
112400
112327
-
Gly
TCC
[ENA]
¡û
>W141712464
JMQR01000161
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
5360
5433
+
Gly
TCC
[ENA]
¡û
>W1910182704
BJNC01000031
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
24864
24937
+
Gly
TCC
[ENA]
¡û
>W1910374336
FUIE01000055
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
190
117
-
Gly
TCC
[ENA]
¡û
>W1910725240
MGLJ01000605
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
4572
4645
+
Gly
TCC
[ENA]
¡û
>W1910725267
MGLK01000021
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
208
135
-
Gly
TCC
[ENA]
¡û
>W1911566767
PCPB01000025
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
212
139
-
Gly
TCC
[ENA]
¡û
>W1911566971
PCPF01000022
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
61371
61444
+
Gly
TCC
[ENA]
¡û
>W1911567211
PCPK01000019
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
61435
61508
+
Gly
TCC
[ENA]
¡û
>W1911567299
PCPM01000013
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
16424
16497
+
Gly
TCC
[ENA]
¡û
>W1911567418
PCPO01000048
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
16412
16485
+
Gly
TCC
[ENA]
¡û
>W1911738135
QUOQ01000002
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
640739
640812
+
Gly
TCC
[ENA]
¡û
>W1810000978
BEWU01000030
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
26191
26264
+
Gly
TCC
[ENA]
¡û
>W1810005709
BFBR01000013
Alphaproteobacteria
Candidatus Phycosocius bacilliformis bacilliformis BOTRYCO-2 [BFBR]
59074
59147
+
Gly
TCC
[ENA]
¡û
>W1810503497
QBKE01000002
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
493792
493865
+
Gly
TCC
[ENA]
¡û
>W1810693172
QLLC01000020
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
189
116
-
Gly
TCC
[ENA]
¡û
>C11100712
CP002396
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
404264
404191
-
Gly
TCC
[Ensembl]
¡û
>W11123408
ADUH01000293
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
52428
52501
+
Gly
TCC
[ENA]
¡û
>W11123422
ADUI01000076
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
17742
17815
+
Gly
TCC
[ENA]
¡û
>W1511489486
JWSY01000026
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
158
85
-
Gly
TCC
[ENA]
¡û
>W1511547874
JZRG01000009
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
162
89
-
Gly
TCC
[ENA]
¡û
>W1511596060
LBNT01000008
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
62304
62377
+
Gly
TCC
[ENA]
¡û
>C161040218
CP012156
Alphaproteobacteria
Hyphomonadaceae bacterium UKL13-1 [CP012156]
1856504
1856431
-
Gly
TCC
-
¡û
>C161047056
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2859902
2859829
-
Gly
TCC
[Ensembl]
¡û
>C161089094
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
813750
813823
+
Gly
TCC
[Ensembl]
¡û
>W1610074219
BCWM01000007
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
138
65
-
Gly
TCC
[ENA]
¡û
>W1610724364
LMEB01000010
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
252
179
-
Gly
TCC
[ENA]
¡û
>W1610736203
LMNC01000007
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
236
163
-
Gly
TCC
[ENA]
¡û
>W1610738453
LMOY01000009
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
347960
348033
+
Gly
TCC
[ENA]
¡û
>W1610739671
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
233
160
-
Gly
TCC
[ENA]
¡û
>W1710071337
BCWM01000007
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
138
65
-
Gly
TCC
[ENA]
¡û
>W1710084612
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
594828
594755
-
Gly
TCC
[ENA]
¡û
>W1710505477
FMTS01000003
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
434910
434983
+
Gly
TCC
[ENA]
¡û
>W1710527012
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
230551
230624
+
Gly
TCC
[ENA]
¡û
>W1710576206
FOZV01000010
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
219
146
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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