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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.786138 (30 seq.)
>W1710944134
LOQE01000020
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
21832
21759
-
Gly
CCC
[ENA]
¡û
>W1711268793
LZDH01000034
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
118175
118248
+
Gly
CCC
[ENA]
¡û
>W1711504281
MKUK01000006
Betaproteobacteria
Alicycliphilus sp. 69-12 [MKUK]
11056
10983
-
Gly
CCC
[ENA]
¡û
>WENV181312351
OFJB01091462
[OFJB] sludge metagenome; sludge
572
499
-
Gly
CCC
[ENA]
¢þ
>WENV170012132
APMI01124243
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
107
34
-
Gly
CCC
[ENA]
¢þ
>C181018984
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
1147804
1147877
+
Gly
CCC
-
¡û
>W09117941
ACCM01000004
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
349813
349886
+
Gly
CCC
[ENA]
¡û
>C09104076
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
1892911
1892838
-
Gly
CCC
[Ensembl]
¡û
>W1910803586
MTBE01000014
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
66560
66487
-
Gly
CCC
[ENA]
¡û
>W1910972090
NKDB02000001
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
1355206
1355133
-
Gly
CCC
[ENA]
¡û
>W1911244771
NSJC01000005
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
96845
96918
+
Gly
CCC
[ENA]
¡û
>W1911244818
NSJD01000006
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
59413
59486
+
Gly
CCC
[ENA]
¡û
>W1911244867
NSJE01000009
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
92804
92731
-
Gly
CCC
[ENA]
¡û
>W1911244928
NSJF01000004
Betaproteobacteria
Vandammella animalimorsus NML03-0146 [NSJF]
256759
256686
-
Gly
CCC
[ENA]
¡û
>W1911270463
NTBH01000003
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
158069
158142
+
Gly
CCC
[ENA]
¡û
>W1911270521
NTBI01000008
Betaproteobacteria
Vandammella animalimorsus NML91-0035 [NTBI]
53127
53200
+
Gly
CCC
[ENA]
¡û
>W1810089007
PGEJ01000025
Betaproteobacteria
Alicycliphilus denitrificans CD02 [PGEJ]
20132
20205
+
Gly
CCC
[ENA]
¡û
>C151003085
AP014683
Betaproteobacteria
Burkholderiales bacterium GJ-E10 [AP014683]
1731205
1731278
+
Gly
CCC
[Ensembl]
¡û
>W1510016553
BBSJ01000031
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
105775
105702
-
Gly
CCC
[ENA]
¡û
>W1510016582
BBSJ01000052
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
14575
14648
+
Gly
CCC
[ENA]
¡û
>W10119629
ADWA01000059
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
2578
2505
-
Gly
CCC
[ENA]
¡û
>C11100610
CP002449
Betaproteobacteria
Alicycliphilus denitrificans BC [CP002449]
1898427
1898354
-
Gly
CCC
[Ensembl]
¡û
>C11100663
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
2066881
2066808
-
Gly
CCC
[Ensembl]
¡û
>W1511390741
JSYI01000024
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
55047
54974
-
Gly
CCC
[ENA]
¡û
>W1511403240
JTKY01000053
Betaproteobacteria
Tepidimonas taiwanensis VT154-175 [JTKY]
38420
38347
-
Gly
CCC
[ENA]
¡û
>W11125895
ADWA01000059
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
2578
2505
-
Gly
CCC
[ENA]
¡û
>W1610042841
BAZJ01000406
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
1078
1151
+
Gly
CCC
[ENA]
¡û
>W1610800434
LOQE01000020
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
21832
21759
-
Gly
CCC
[ENA]
¡û
>W1611029605
LZDH01000034
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
118175
118248
+
Gly
CCC
[ENA]
¡û
>W1710040001
BAZJ01000406
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
1078
1151
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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