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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.78655 (13 seq.)
>W1711079162
LSNW01000006
Gammaproteobacteria
Methylothermaceae bacteria B42 [LSNW]
60166
60252
+
Leu
CAG
[ENA]
¡û
>W131217718
ATXB01000001
Gammaproteobacteria
Methylohalobius crimeensis 10Ki [ATXB]
2706346
2706432
+
Leu
CAG
[ENA]
¡û
>C015242
CP000127
Gammaproteobacteria
Nitrosococcus oceani ATCC 19707 [CP000127]
3277718
3277804
+
Leu
CAG
[Ensembl]
¡û
>WENV180309708
OBJS01023335
[OBJS] beach sand metagenome; beach sand
593
679
+
Leu
CAG
[ENA]
¢þ
>W08011093
ABSG01000028
Gammaproteobacteria
Nitrosococcus oceani C-27 [ABSG]
132969
133055
+
Leu
CAG
[ENA]
¡û
>WENV170960166
MKWU01017744
[MKWU] sponge metagenome;
2674
2760
+
Leu
CAG
[ENA]
¢þ
>C181000531
AP014836
Gammaproteobacteria
Candidatus Nitrosoglobus terrae TAO100 [AP014836]
337268
337182
-
Leu
CAG
-
¡û
>C191157653
CP038033
Gammaproteobacteria
Nitrosococcus wardiae D1FHS [CP038033]
1308552
1308466
-
Leu
CAG
-
¡û
>W141802339
JPFN01000126
Gammaproteobacteria
Nitrosococcus oceani [JPFN]
124262
124348
+
Leu
CAG
[ENA]
¡û
>W141803334
JPGN01000086
Gammaproteobacteria
Nitrosococcus oceani C-27 [JPGN]
21967
22053
+
Leu
CAG
[ENA]
¡û
>C10109801
CP001798
Gammaproteobacteria
Nitrosococcus halophilus Nc 4 [CP001798]
445414
445328
-
Leu
CAG
[Ensembl]
¡û
>C10109929
CP002086
Gammaproteobacteria
Nitrosococcus watsonii C-113 [CP002086]
3168677
3168763
+
Leu
CAG
[Ensembl]
¡û
>W1610918072
LSNW01000006
Gammaproteobacteria
Methylothermaceae bacteria B42 [LSNW]
60166
60252
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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